KEGG   Lactuca sativa (garden lettuce): 111915066
Entry
111915066         CDS       T05352                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111915066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsv03021]
    111915066
Enzymes [BR:lsv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111915066
Transcription machinery [BR:lsv03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     111915066
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 111915066
NCBI-ProteinID: XP_023766539
LinkDB
Position
9:99899675..99904615
AA seq 1205 aa
MEEEAGPSFKDKPSNGAVHLDIDMEDDDDDDDMMDALSVRDFDEPYLKNFCKRASTSFFK
HYGLISHQINSYNDFINVGIQNVFDSIGEIIVEPGYDPSKKGDNPWRYASIKFGQVNLER
PRFYTGEKAESGKEFLEFLPRHARLQNMTYSSRMKVKLTLQVYTQELVRSDKFKTGKEKY
LDKQIQETRDLDVFVGRIPVMINSDTCWMSEDKKDDCDYDQGGYFIIKGAEKIFIAQEQL
GLNRVWLASSPNYRVMYRSVHKRKRVYVKLADTPKIEDIGGGAQVITVYLLSLMDIPIWI
LFFALGVSSDKEVVDLIDADITDGNIVNILIASIHAADQRCELEKCDEFRQGRNSLNLIE
KLLKESKFPPKESVKECIENYLFPNIIGFKRKARFLGYMVKCLLEGYTGKRKVDNKDDFR
NKRLELAGELLERELRIHLRHVEKRLVKSLQRDLYPDRSVGEIWQYLDASIITNGLTRAF
STGSWSHPYKNMERTSGVVAMLRRANPLQMISDMRRTRQQVLYAGKAGDARYPHPSHWGK
ICFLSTPDGENCGLIKNLAGTALVSTAVRGGIFDVLVACGMEKLVDDTSTSLSGMDKVFV
DGDWVGFCKNSASFVAEFRRRRRKTEVPPQVEIKRDTRHKEVRIFRDAGRILRPLIVIQN
LPKIRTLKGGSYSFQDLLNNGVIELIGPEEEEDCCTAWDIKYLFLENDEHAPKKYTHCEL
DMSFMMGISCGIIPFANHDHAKRVLFQSQKHSQQAVGYSSTNPDIRVDTLSHQLFYPQRP
LFKTVLSDCLEKGQQSGQTQKGMIARPEFFNGQCAIVAVNVHLGYNQEDSLVMNRSSLDR
GMFRSEHIRSYKAEVDNTEVSKKKVKSDEAVNFGKIQSKIGRVDSLDEDGFPFIGANLQS
GDIVIGKFTEAGTDHSVKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRAPCLGDKFSS
MHGQKGVLGYLESQENFPFSVQGIVPDIVINPHAFPSRQTPGQMLESALGKGIALGGSQR
YATPFSSLSIDAITDQLHRAGFSRWGNERLYDGRTGEMVKSLVFMGPTFYQRLVHMSEDK
VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDCSEMHV
CTKCKRMAGVIQRSVAGGHKIRGPYCRVCDSVEDVIKVSVPYGAKLLTQELFSMGISLKF
DTELC
NT seq 3618 nt   +upstreamnt  +downstreamnt
atggaagaagaggcaggaccaagcttcaaagataagccttcaaatggagctgtacatctc
gacatagacatggaagacgacgacgatgatgatgacatgatggatgcactatcagttaga
gatttcgatgaaccatacctaaagaacttctgcaaaagggcatcaacctcctttttcaaa
cactatgggcttataagccaccagatcaactcatacaatgatttcatcaacgttggaatt
caaaatgttttcgactccataggtgagatcattgtggagcctggttatgatccctcaaag
aagggtgataatccatggaggtatgcttcaataaagtttggacaagtcaaccttgagagg
ccaaggttctacactggagaaaaagccgaatctggtaaagaattcctagaattcttacct
agacatgctcgtcttcaaaacatgacatactcatccagaatgaaggtgaaactcacacta
caggtgtatacacaagaacttgtccgtagtgacaagttcaaaacaggcaaagaaaagtac
ttagacaaacagatccaagaaaccagggatcttgatgtgtttgttgggaggattcctgtg
atgattaattctgacacatgctggatgagtgaagataaaaaagatgactgtgattatgat
caaggaggctatttcataatcaagggagctgaaaagatctttattgcacaagagcagctt
ggattaaacagagtttggttagcaagttctccaaattatcgtgtcatgtatcgctctgtg
cacaaaagaaaaagggtttatgtgaaacttgcagacactcccaagattgaagatatagga
ggaggggcacaagtgataactgtttatctgttaagtttaatggatataccaatatggatt
ctcttttttgcccttggtgtatcttctgataaagaagtggtagacttgattgatgcagac
attaccgatggcaatatcgtcaatattttaattgcttccattcatgctgctgatcagagg
tgtgaattagagaaatgtgatgaatttcgtcaaggaagaaactcactaaatctcattgaa
aaacttctcaaagagagcaaatttccacccaaagagagtgtgaaagagtgcattgagaat
tacttatttcctaatatcattgggttcaaaagaaaagcaagatttttagggtacatggtg
aagtgtctgttagaagggtatactgggaaacgaaaagttgacaacaaagacgatttcagg
aacaaaagattggaacttgctggtgagttacttgaaagagagttgagaattcatcttcga
catgttgagaagagattagtgaagtcattacaaagggatctttatccagatagaagtgta
ggtgaaatctggcaatatcttgatgcttcaattattacaaatgggcttacacgggctttt
tcaacgggttcttggtcccacccgtataaaaacatggaaagaacttctggagttgttgca
atgcttagaagagcaaatcctttgcaaatgatttcagatatgagaaggacacgtcagcaa
gttttgtatgctggaaaagctggagatgcaagatacccacacccttctcattggggaaag
atttgttttctttctacccctgatggggaaaactgtgggttgataaagaatctagctggc
actgctctggtgtcgacagctgtcaggggtggaatttttgatgtattggtggcatgtgga
atggaaaaattagtagatgatacttcaacttctttatctggaatggataaagtttttgtt
gatggagattgggttggattttgcaaaaattctgcttcttttgttgctgagttcagacgc
aggcgtcgcaaaacagaagtacctcctcaggttgagataaaaagggacacaaggcacaaa
gaagtgagaatatttcgtgatgcagggcgtattttacgcccactcatagtcatccaaaac
ttacccaaaatcagaaccctaaaaggtggaagctattcatttcaagatcttttaaacaat
ggagtcattgaactaatcggacccgaagaggaagaagattgctgcacagcatgggacatc
aaatacctcttcctcgaaaatgacgaacacgcccctaagaaatacacacattgtgaactc
gacatgtcattcatgatgggcataagctgtggcatcatcccttttgctaaccatgatcac
gcaaaaagagtcctattccaatcccaaaaacacagtcaacaagctgttggatactcatcc
acaaatccagacatcagagtcgacactctttcacaccaactcttctaccctcaaagacct
cttttcaaaaccgttctttcagattgccttgaaaaaggtcaacaatctggtcaaactcaa
aagggtatgattgctagacccgagtttttcaacgggcagtgtgctattgtagcggtcaat
gtccacctcgggtataatcaagaggattcattggtgatgaacaggagctcgcttgaccgg
gggatgtttcggtcagagcatattagaagctataaagctgaggttgataacactgaagtt
tcaaagaagaaggttaagtcagatgaggctgtgaattttgggaagattcaaagtaagatt
ggaagggtcgatagtttggatgaggatgggtttccttttatcggtgcaaatttacaaagt
ggtgatattgtgattgggaaatttacagaagcagggactgatcatagtgtgaaactgaaa
catactgaaagaggaatggttcagaaggttgtgttgtctgctaatgatgaagggaagaat
tttgcagtggtatctctgagacaggtgcgggccccatgccttggtgacaagttctcgagt
atgcatgggcagaagggggttttagggtatttggagtctcaggaaaactttcctttcagt
gtgcaaggaatagttccagatattgtgatcaatccacatgcattcccatccagacagact
cccgggcagatgctggaatctgctttggggaaaggtatcgcgttgggaggctcacagaga
tacgctacacccttttcttctctctccattgatgccataacagatcagcttcacagggct
ggattttctcgatggggaaacgagagactctatgacgggaggacgggcgaaatggtaaaa
tcactagtgttcatgggccccacgttctaccagaggcttgttcacatgtcggaggacaaa
gtgaagtttagaaacacgggcccggtgcacccgctgacgaggcaaccggtggctgacagg
aaacggtttggtggaataaaatttggagaaatggaaagggactgcttgatagctcacgga
gcctctgctaacttacacgagcgccttttcacactcagtgactgctctgaaatgcatgtc
tgtacaaaatgcaaaagaatggcgggtgtgattcagaggtctgttgcaggtggacacaag
atccggggcccgtattgtcgggtgtgtgattcggttgaagatgtgattaaggtgagtgtg
ccttatggtgctaagttgttgacgcaggagctctttagtatggggatttcgcttaagttt
gataccgagttatgctga

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