Lactuca sativa (garden lettuce): 111915139
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Entry
111915139 CDS
T05352
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111915139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111915139
03012 Translation factors [BR:
lsv03012
]
111915139
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111915139
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111915139
Translation factors [BR:
lsv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111915139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
ATPase
AAA_16
NACHT
NPHP3_N
nSTAND3
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111915139
NCBI-ProteinID:
XP_023766584
LinkDB
All DBs
Position
8:complement(1103953..1111097)
Genome browser
AA seq
1180 aa
AA seq
DB search
MPYPAVFIQKYLRVSLNPLRTNSFQLRRRLHLSPRLIRPLPPSSRPALVLICSSSSSHVS
SSKHLIKRTRNKDSYSLPYFYQQSLPYGRYAYDEYASEEESDRENLQLPQSLGASTIDNI
EEWQWKLTTLIRNKDEQEVVSRERKDRRDFEQLSALATRMGLHSHQYSKVVVFSKVPLPN
YRSDLDDKRPQREVVLPSELHSRVDYHLKSYLSQKSATRDGYPNNTLPTSRTSESLVGEA
DEPLRQSPVAEGILRRKSFQLRNKQQDWQESVEGQKMQELRRSLPAYKEKEALLNAISRN
QVIVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMSVAERVAAERGEK
LGDSVGYKVRLEGIKGRDTRLLFCTTGILLRRLLLDRSLQGVTHVIVDEIHERGMNEDFL
LIVLKELLPRRPELKLILMSATLNAELFSSYFGGAPMMHIPGFTYPVRSYFLENILEMTG
YRLSTYNQIDNYGQEKSWKMQKQTLRKRKTQIASAAEDALGAADLRELNPWTRDSLSCWN
PDSIGFNLIENVVCHICKKERPGAILVFMTGWDDINSLKDQLQSHPLLGDPTKVLLLACH
GSMDSSEQKLIFNKPEDGIRKIVLATNMAETSITINDVVYVVDCGKAKETSYDALNNTPC
LLPAWISKASARQRRGRAGRVQPGECYHLYPRSVYDAFAEYQLPELLRTPLQSLCLQIKS
LQLGSISDFLSKALQPPEPLSVQNAIEYLKIIGALDDKENLTVLGRKLSVLPVEPKLGKM
LILGAIFNCLDPIMTVVAGLSVRDPFLMPFEKKDLAESAKAQFSGGDNSDHLALLRAYDG
WKAAERQQSGAEYCWRNFLSSQTLRAIDSLRKQFYHLLRDCGLVENMEKCNTWSHDQHLI
RAIICSGLFPGICSVVNKEKSVSLKTMEDGPVLLYLNSVNAQEPRIPYPWLVFNEKVKVN
TVFLRDSTAVSDSVVLLFGGTVSKGAMDGHLKMLGGYLEFFMKPGLAATYLTLKRELDEL
IQMKLLNPKIDIGNENEKGLVEALKLLVSGDRCEGRFVHGRKVSQAVLKKETKNKKPASM
SSTSGSVAEHDNSKNHLQTMLLRAGHQPPSYKTSQLKNNKFRSTVVFNGLDFVGQPCGSK
KLAEKSAASEALHWLTGETHSSKKAIDHISSLLQTNKKRR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccttaccccgcagttttcatccagaaatacctcagagtatctctgaacccactcagg
actaattcatttcagctccgccgtcgcctccatttaagccctagactcatccgacctctt
cctccatcatcgaggcctgcgctagtgttaatttgttcctcgtcttcttctcatgtttct
tcttccaaacacctaattaagagaacgagaaataaagattcctactcgttaccttacttt
taccagcaaagtttgccctacggccgctacgcctacgacgaatatgcttccgaggaggag
tctgaccgtgaaaatttgcaattgccccaaagtttgggggcttccactattgataacatt
gaagaatggcagtggaagctaactacactaatccgaaataaagatgagcaagaggtagtt
tcacgagagagaaaagacagaagagattttgagcaactctcagcactagctactcggatg
ggtttacatagccaccaatattcaaaagtagttgtcttcagtaaagttccgttgccaaat
tacagatcagatttagatgataagcgcccgcaaagagaggtggttcttccttcagaatta
cacagccgggttgattatcatctaaaatcatacctttcacaaaagtctgctaccagagat
ggttatccaaataacaccttacctacatcaagaacatccgagagtcttgttggtgaggct
gatgagcctctcagacaaagtcctgttgcagagggaattctccggaggaagagttttcag
ctgcgaaataaacaacaagattggcaggaatctgttgaaggccaaaaaatgcaagaacta
cggagaagcctacctgcatataaagagaaagaagcattgttaaatgctatttccagaaat
caggtaattgtggtgtctggtgaaacggggtgtggtaaaaccacacaactacctcaatac
atcttagagtctgaaattgaagctgctcgtggagcagtttgcagtattatctgcacccaa
cccagacgaatatctgctatgtcagttgctgagagggttgctgcagaacgaggggagaag
cttggagattctgttgggtataaagttcggcttgagggaataaaaggaagagatactcgc
ctgctgttttgcactactggcattttgcttaggagattactactcgacaggagcttgcaa
ggtgtaactcatgtcattgttgatgagatccacgaacgagggatgaatgaggattttctt
cttatcgtgttgaaggagcttcttcctcgcagaccagaactgaagttaattttgatgagt
gcaaccctaaatgctgagcttttctcctcctactttggtggagctccaatgatgcatatt
cctggtttcacttatccagttcggagctattttctggagaatattttagaaatgactgga
tataggctgtcaacatataatcaaattgataattatggccaagagaaatcatggaaaatg
cagaaacaaactcttcgtaaaaggaagacccaaattgcttcagctgcggaggatgctctt
ggagctgctgatttgagagagttaaacccgtggactagggattccctgtcatgttggaac
ccggattcaattgggttcaatcttattgagaatgttgtttgtcatatatgtaaaaaagaa
aggccaggtgctattttggtgtttatgactggttgggatgatataaattctctcaaggat
caactccaatctcatccgttacttggagatccaaccaaagttttgctgcttgcctgccat
ggttcgatggacagctcagaacagaaattgatattcaataaacctgaagatggcatcagg
aaaatagttctagccactaacatggccgagacaagcatcaccatcaatgatgtagtttac
gtggttgactgtggaaaagctaaagagacttcctacgacgcactcaacaacaccccgtgt
ttgcttccagcctggatctcaaaggcttctgctcgccaaaggagaggaagagctggacgt
gtgcaaccaggggagtgctaccacttgtatcccagatctgtatatgatgcttttgctgaa
tatcaacttccagaacttttgaggacacccttacagtctttatgcctccaaattaaaagc
ttgcaacttggtagtatttcagactttttatcaaaggccttgcagccacccgaaccttta
tcagttcaaaatgctattgaatacttgaaaataattggagctctggatgacaaggagaat
cttacagtattaggacgtaagttgtcagtgcttccagttgagccaaagcttgggaagatg
ttaatattaggggctatcttcaactgcctggatccaataatgactgttgttgctggttta
agtgtgagagatccatttttgatgccgtttgagaagaaggatttagctgagtctgcaaaa
gctcagttttctggaggtgataacagcgaccaccttgctcttcttcgtgcttatgatggt
tggaaagctgctgaaagacagcaatcgggtgcagagtattgttggagaaatttcctttcc
tcacaaactttgagagctattgattctcttaggaagcagttttatcatctgcttagagac
tgtggtttggttgaaaatatggagaaatgcaacacatggagccatgatcaacatctcatc
cgagccatcatatgctcaggcctcttccccggaatttgctctgttgtgaataaagagaaa
tcagtatcattgaaaacaatggaagatggtcctgtattgctttatttaaattcagttaat
gctcaggaaccaagaattccatatccatggcttgtattcaatgaaaaggtgaaagtgaat
actgtctttctaagggattcaacagctgtatccgattctgtagttctcttatttggaggc
accgtttccaaaggggccatggatggacacttgaaaatgttggggggttacttggagttc
ttcatgaagcctgggttagcagccacttatctgaccttaaaaagagagcttgatgaactc
atccagatgaagcttttgaatccgaaaatagacattggcaatgaaaacgaaaagggacta
gtggaggctctaaaactgctagtatccggggacagatgtgagggtagatttgtccacggt
cgaaaagtatcacaagctgttttaaagaaagaaacaaaaaataaaaaacccgcatccatg
tcttcaacaagtgggagtgtagctgagcatgataactccaagaatcacttacaaacaatg
cttttaagagcggggcatcaaccaccaagctacaagacatcacagttgaaaaacaataag
ttccggtccactgtggttttcaatgggttggattttgttgggcagccatgtgggagtaaa
aaacttgctgaaaaaagcgctgcctctgaggctctccactggttaaccggtgagacccat
tcatcaaaaaaggctatcgaccatatttcttccttattacaaacaaacaaaaagaggcgc
tga
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