Lactuca sativa (garden lettuce): 111915362
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Entry
111915362 CDS
T05352
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111915362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111915362
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111915362
mRNA cycle factors
Common to processing body (P body) and stress granule
111915362
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
111915362
NCBI-ProteinID:
XP_052624329
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All DBs
Position
2:84985750..84991546
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AA seq
868 aa
AA seq
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MIVKMDKAVASSSHDLAQRLFDKNIELENKRRKSAQARVPSDPNAWQQMRENFETIILED
HSFSEKHSIEFALWQLHYRRIEEFRAHYNAASATDSTTSRAGGAARPDRASKIRLQFKTF
LSEATGFYHDLILKIRAKYGLPIGQFYPEPENHNVKEKDGKKFNEVKKGLISCHRCLIYL
GDLARYKGLYGEGESKSRDYAAASSYYLQAASLWPSSGNPHHQLAILATYSGDELMAVYR
YFRSLAAENPFSTARDNLIVAFEKNRQSYSQLHVDSKASSVRTRGRGRGKGEPGVRSKEP
ITDTTPDVEKATEIRQVFKAFRVRFVRLNGILFTRTSLETFEEILSLVTNTLQTLLSSGA
EDEPNFGTDNSENALFIVILVTILIFTVNNVKGGPEGQTYADIVQNTVLLKNALITFHNL
IGQLLKRCLQLTNPSSSFLLPGILISMEYLASRPDVITETDDFWTHCISFFNKLLSAEIN
DMTRYEERRENDYQPALWEDFETRGFLPLQSAQTFLDFSRKHSVSGDKSARVKRLLAAGK
VIADRITVDRKKVRFDPNMKKFVIGIETQKHENKSNGVINEEAPAPAPVESDEEDEVIVF
RPNLIDNRTEMPLVKGTTQEEVENVQSKDSGTTTTSQFAVPVSVYNAVGQPYHQSPMWPG
SLTGGFKGLSLMENGHAGQPGMQSSNAALPIQQVMGIRENSVNYDIIPPSGPDPYIVGRN
TFPNMPTSSLKVSTGRPVRHLGPPPGFSSVRPNSNKQVGQNQNQNPVNDDYSWLDGYQLQ
SSMKAGVQPVNFGTHYMNMNMNMNESVATTSSFPFPGKQVQVQFEGARQQNWPETATDHR
ETLQQQYVPLPRLDQQGGQSTWKGNQFV
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgaagatggataaagcagttgcttcttcatcacatgacctcgcccaacgtctt
tttgacaaaaacattgagttggaaaataagcgccgaaagtcagctcaagcaagagtgcca
tcagatccaaatgcttggcaacaaatgcgtgaaaattttgaaacaataatacttgaagac
catagcttttctgagaagcacagtattgaatttgctctatggcagttacattaccgaagg
attgaggaattcagggctcattacaatgctgcatctgctacagattcaaccacatctagg
gcagggggggctgcccgacctgaccgagcttcaaaaattcgtctgcaattcaaaactttc
ctctcagaagctactggtttttaccatgatctaattttaaagattcgggccaaatatgga
ctcccaattggacaattctaccctgaacccgagaaccataatgtgaaggagaaagatgga
aagaaatttaatgaagttaaaaagggtttgatatcctgccatcgttgtttgatatatctt
ggtgatcttgcacgctataaagggctttatggggaaggtgaatcaaaaagtcgtgattat
gcagctgcttcaagttactatttgcaagcagcttctctttggccatctagtgggaatcca
catcatcagcttgctatattggctacttattcaggagatgaattgatggctgtataccgt
tatttccgaagtctggcagctgaaaatcccttctccactgcaagggataacttgatagta
gcctttgagaagaatcggcaaagttatagtcagttgcatgttgattcaaaagcttcttct
gttaggacaagaggcagaggaagagggaaaggggagccaggtgtccgatcaaaggagcca
attaccgatactacccctgatgtggaaaaagcaactgaaattcgccaagtgtttaaagct
tttcgtgttcggtttgttcgattgaatggcattcttttcacacgcacaagcttggagaca
tttgaagaaatcctctctctagtcaccaacactttacaaacccttctttcttccggagca
gaagacgagccaaattttggcacggataattccgaaaacgcccttttcatcgtaatactt
gtcaccatacttatattcacagtcaacaacgtaaaaggaggacccgaaggtcaaacatac
gcagacattgtccaaaacacagttctcctcaaaaacgccctcatcacatttcacaatcta
atcggtcaactcctgaaaagatgcctacagttgaccaatccttcctcaagcttcttactt
cccggaatcctaatttccatggaatatctcgcttctcgacccgatgttattactgaaact
gatgacttttggacccactgcatatctttcttcaataaacttctctctgctgaaatcaat
gatatgacaaggtatgaagagaggagggaaaatgattatcagcctgcattgtgggaggat
tttgaaaccagaggatttttgccccttcaatctgcccaaacttttttggatttttcaagg
aagcattctgtttcgggtgataaatcggctcgtgtcaagcggcttctggctgctgggaaa
gttattgctgaccggattacagttgaccggaaaaaggtcaggtttgaccccaacatgaaa
aagtttgttattggcattgaaacacagaaacatgaaaacaaatcaaatggggtgattaac
gaggaggcacctgcacctgcacctgtggaaagtgatgaggaggatgaagtgattgttttt
cggccaaatttgattgataatcggacggaaatgcccctggtaaaagggaccactcaagag
gaggttgagaatgtgcaaagtaaagattcgggtactactactacttctcagtttgcggtt
ccggtttcggtgtacaatgcagtcgggcagccatatcatcagtctccgatgtggccgggc
agccttacgggcgggtttaaaggtttaagcttaatggaaaacgggcatgcgggtcaaccc
ggaatgcagagttcaaatgctgcacttccaatccagcaggttatgggtatacgtgaaaac
agtgtaaattacgatatcatccctccttctggaccagatccttacattgtgggtcgaaac
acgttcccaaatatgccgactagctctttgaaagtttctacgggtcgacccgttagacat
cttggacccccacctggatttagctctgtgagacctaatagtaataagcaagtgggacag
aatcagaatcagaatcctgtgaatgatgattatagctggttggatgggtatcagttgcaa
tcatcaatgaaggcaggggtacaaccggtaaatttcgggacccactatatgaatatgaat
atgaatatgaatgaatccgttgctactacttctagttttccgtttcccgggaaacaagtt
caagttcagtttgaaggtgcaaggcagcaaaactggccggaaaccgccacagaccaccgt
gaaacacttcaacagcagtatgttccccttccccgattggaccaacaagggggacagtct
acatggaaaggcaatcagtttgtgtga
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