Lactuca sativa (garden lettuce): 111915452
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Entry
111915452 CDS
T05352
Name
(RefSeq) vacuolar protein sorting-associated protein 35A
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
111915452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111915452
Membrane trafficking [BR:
lsv04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
111915452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
111915452
NCBI-ProteinID:
XP_052625303
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Position
3:102780687..102786154
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AA seq
793 aa
AA seq
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MMSDGVEDEEKWLTAGIAGLQQNAFYMHRALDSNNIKDALKYSAQMLSELRTSRLSPHKY
YELYMRAFDELRKLEIFFKEESKRSCSIIELYELVQHAGNILPRLYLLCTVGSVYIRSKE
APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDENTVMDAVEFVL
QNFTEMNKLWVRMQHQGPAREKEKREKERNELRDLVGKNLHVLSQIEGIDLELYRDTVLP
RILEQVVNCKDDLAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPSVDIKTVLSGLME
RLSNYAASSIEVLPEFVQVEAFAKLNNAIGQVIEAQPDMPVFGAVTLYSSLLTFTLHVHP
DRLDYVDQILGACVSKIAGKGKLEGKATKQIVALLSAPLEKYNDIDTALKLSNYPLVMEY
LDDSTNKVMSNVIIQSIMKNKTHISTAEKVGALFELIKGLIKDLDGDDNDEMDEEDFKEE
QNSVARLIQMLYNSDPEEMLKIICMVKKHIMSGGPKRLPFTIPPLIYNALKLVRRVQSQD
ENGSEDETSSATPKKIFQMLNQTIEVLSMVPVPDLALRLYLECAEAANDCDLEPVAYEFF
TQAYILYEEEISDSKAQVTALYLIIGTLQRMHTFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVTKGSGGSVMLFIEILN
KYLYFFEKGNTQISVASIQGLIELVTSEMQSDSRSTSDPAADAFFASTIRYIQSQKDKGG
ATGEKFEAIKELL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccgacggcgttgaagacgaagagaaatggctcacagctggcatcgccggcctt
caacagaacgccttctacatgcatcgcgctttggattcgaataatataaaggatgcgttg
aaatactctgctcagatgctatcggagcttcgtacttcgaggctttcccctcacaaatac
tatgagctctatatgagggcatttgatgaattgaggaagctggagatctttttcaaggaa
gagagtaagcgtagttgctcgattattgagctgtatgaacttgtgcagcatgcaggcaac
atattgccgagactgtatctactttgtacagtaggatctgtgtacattaggtcaaaggag
gctcctgctaaggacattttaaaagatcttgttgaaatgtgtcgtggtatccaacatcct
cttcgtggactctttctaagaagttatctttctcaagtcagtagagataagttacctgat
ataggttccgagtatgaaggggatgaaaacactgttatggatgctgttgagtttgttctt
caaaacttcacagagatgaacaaattgtgggtccgaatgcaacaccaaggacctgctagg
gagaaggagaaacgtgaaaaggagaggaatgagcttcgtgatcttgttggaaagaatcta
catgttctcagtcaaattgaaggcattgaccttgagctatacagagacactgttcttcct
agaatcttggagcaggttgtgaattgcaaagatgatcttgctcaatattacttaatggat
tgtattattcaagtctttcctgatgagtatcatttacaaactcttgaaacattattgggt
gcttgtcctcagcttcagccttctgttgacattaaaacagtactttctggtttaatggaa
aggctatctaactatgctgcatcaagcattgaggttttaccagaatttgtccaagtagaa
gcttttgcaaagctgaacaacgccataggtcaggtgattgaagcacaaccagatatgcct
gtttttggagctgttactttatattcatctcttcttacattcacactccatgtccatcct
gatcgacttgactatgtggatcaaatattgggtgcatgtgtaagcaaaattgctggaaaa
gggaagctggaaggaaaagccacaaagcagattgttgcacttctaagtgctccattggag
aaatataatgatatagacactgcattaaagctttcaaattatcctttagttatggagtat
ttagatgatagcactaataaagttatgtctaatgttataatccaaagcatcatgaaaaac
aagactcacatctcaactgctgaaaaggttggggctttatttgaactaataaaagggctc
attaaagatttggatggcgatgataatgacgagatggatgaggaggactttaaggaagag
cagaattctgttgcacgtttaattcaaatgttgtataatagtgatccagaagagatgttg
aagattatatgtatggtgaagaagcatatcatgagtggaggacccaagcgacttcccttc
acaattcctccactaatatacaacgctctcaagttggtgagacgagtacaaagtcaggat
gagaatggtagtgaagatgagacatcatcagccacaccaaaaaaaatatttcaaatgttg
aatcagacaattgaggtgttgtcaatggttccagtacctgaccttgcattgaggttatat
ttggaatgtgctgaggctgcaaatgactgtgatctagaacctgtggcatatgagtttttc
acccaagcatatatattatacgaagaagaaatttcggattccaaggcacaggtaacagct
ctatatctgattatagggacacttcagaggatgcacacctttggggttgaaaacagggat
accttaacccacaaggccacagggtattcagcaaagctgttgaagaagccagatcagtgt
agggctgtttatgcttgttcacatctcttttgggttgacgatcaagatggaatcaaggat
ggcgagagagtattgctttgcttaaagcgtgcgttaagaatcgcaaatgctgctcaacaa
atggcgaatgtgacaaaaggtagcggtggatcggtgatgctgtttattgagattctaaac
aagtatttgtatttttttgagaagggaaacacacaaatcagtgttgcatcaattcaaggg
ctgattgaattggtaacaagcgagatgcaaagtgatagcagaagcacatcagatccggct
gctgatgctttttttgcgagcacgatccgctacattcagtcacagaaggataagggtgga
gcaacaggggagaagtttgaggcaattaaggaacttctttga
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