Lactuca sativa (garden lettuce): 111916115
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Entry
111916115 CDS
T05352
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111916115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111916115
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
111916115
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
111916115
NCBI-ProteinID:
XP_023767516
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All DBs
Position
4:67470346..67474425
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AA seq
685 aa
AA seq
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MARNKEALILLIDVGPSMHSVLPEIQKVCSLLIQKKLVFNKYDEVGVVVFGTKDTDNDLM
KEVGGYEHVTVLQPIKVVDGDLVDVTQQLPQGTLPGDFMDAIVVGMDMLIKKYQDTIKGK
KRICLITNAMYPIKDPYEGTKEDQVYTIAEQMAAHGMKIDCIIYRGDQNRVPHNTMIEEN
DMLLSIFSKKTKAKAVHVESSTSLLGALRTRNLAPVTTFRGDLELSPTCKIKVWVYKKTS
EEKFPTLKKYSDKAPSTDKFATHEIKLDYEYKSVQDPSKVVPPEQRIKGYRYGPQVIPIS
SAEFEAAKFKPEKGVKLLGFTNASNVMRHYYMKDVNIIIADPGNKKAILAVSALARAMKE
MNKVGILRCVWRQGQANVVIGVLTPNVSDKDNIPDSFYFNVLPFAEDVREFEFPSFSNLP
ISLQPNKEQQEAADKLVMMMDLAPAGKEEALRPEFTPNPVLERFYHHLELKSKNPDAAVP
PLDSTLKRITEPDHEVVSQNKLVIDEFCRNFEIKENPKLKKSARRLLRDQKSGSFEGQVG
RIEDKSMDIVGSTSAVKVETIGELTAVQDFEAMISRRDSPEWVSKAIFGMKNKVLDLVEN
SYEGDNYPKALECLVALRKGCVIEQEPKQFNNFLQHLYRFCEEKDLKSFCEFLASKDVTF
ITKTEAEDSDIAEKDARSLFVKAET
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggaagcattgatcttattgattgatgttggtccatcaatgcacagt
gtcttaccagagattcaaaaagtttgttctttgctaatacaaaaaaagctggttttcaac
aaatatgatgaagtaggagttgttgtatttggaacaaaagataccgacaatgatttgatg
aaagaagtaggtggatatgaacatgtcacagttttacagccaatcaaagtggttgatgga
gatcttgttgatgttacacaacaacttcctcaaggaacacttcctggagattttatggat
gcgattgttgttggaatggatatgctaattaaaaaataccaagatacaatcaagggtaaa
aaacgtatatgtctcataactaatgccatgtaccctatcaaagatccatatgaaggtaca
aaagaagatcaagtctacaccattgctgaacagatggctgcacatgggatgaaaattgat
tgtatcatatatagaggagatcaaaaccgggtcccacataataccatgattgaagaaaac
gatatgctgttgagtatattttcaaaaaagacaaaagcaaaagcagttcatgttgaaagt
tcaacttcattattaggtgcattgagaacacgtaacttagctcctgtaaccacattcagg
ggtgatcttgagttaagccctacatgtaaaatcaaggtttgggtatacaagaaaacatct
gaagaaaaattcccaactctcaaaaaatattccgataaagccccttcaacagataaattt
gccactcatgaaatcaaattagattacgagtataaaagtgttcaagatcctagtaaagtt
gtccctccagaacaaagaataaaaggctacagatatggcccacaagtcattcctatctca
tctgctgaatttgaagcagccaaattcaaaccagaaaagggcgtgaagcttttagggttc
acaaatgcttcaaatgttatgagacactactacatgaaagatgtcaacattatcatcgct
gaccctggcaacaaaaaggcaattcttgctgtttctgcattagcaagggcaatgaaggaa
atgaacaaagttggaattttgagatgtgtgtggagacaagggcaagcaaatgttgttata
ggagttttaactcctaatgtatccgacaaagataatatcccggattctttttacttcaat
gtccttccttttgctgaagatgtaagggagtttgagtttccttctttcagcaaccttcca
atatcacttcagccaaataaagaacagcaagaagctgcagataagttggtgatgatgatg
gatttagcgccagctggcaaggaggaagctttacgcccggagttcactccgaatcctgtt
ttggagcgtttctaccaccatcttgaactgaaatcaaagaatccagatgcagcagtgcca
ccacttgattcaactctgaaaagaataacagaacctgatcatgaagtagtatcacagaac
aagcttgtaattgatgagttttgtagaaattttgaaatcaaagaaaatcccaagctgaag
aaatcggctaggcgcttactgagggatcaaaagtctggatcttttgaagggcaagttggt
aggatcgaagacaagtcaatggacatagtagggtccacgtcagcagtgaaggtggagaca
attggggagttgacagctgtacaagattttgaagctatgatttcgcgtagagatagccct
gagtgggttagtaaagcgatatttggcatgaaaaataaagtattggatttggtggagaat
tcgtatgaaggggataattatccaaaggctttagaatgtttggttgctctcagaaaggga
tgtgtcattgagcaagaaccgaagcaattcaacaattttctgcaacatctttatagattc
tgcgaagagaaagatttaaaaagtttctgtgagtttcttgcttcaaaagatgttacgttt
attaccaaaacagaggctgaagacagtgacattgcagaaaaagatgctagaagcttgttt
gtgaaagcagagacttga
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