Lactuca sativa (garden lettuce): 111916180
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Entry
111916180 CDS
T05352
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111916180
09123 Folding, sorting and degradation
03018 RNA degradation
111916180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111916180
03041 Spliceosome [BR:
lsv03041
]
111916180
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111916180
mRNA degradation factors
5'-3' decay
Lsm complex
111916180
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111916180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
M11L
Motif
Other DBs
NCBI-GeneID:
111916180
NCBI-ProteinID:
XP_023767579
LinkDB
All DBs
Position
8:188293993..188296136
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AA seq
98 aa
AA seq
DB search
MLGGPGLETVVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVIGELDEELDASLDLTELRAHPLKPIIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtgggcccggacttgaaacagtcgttgatcaaatcatttctgttatcacaaac
gatggacgcaacatagtgggagttttgaaagggttcgatcaagccacaaacataattctt
gatgaatctcatgaaagagtttattccaccaaggaaggtgttcaacaactcgtattaggt
ctctacatcatacggggtgataacataagtgttattggggaattggatgaagagcttgat
gcaagcttggatttaacagaattaagagcccatcctttgaagcctattattcattga
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