KEGG   Lactuca sativa (garden lettuce): 111916180
Entry
111916180         CDS       T05352                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03018  RNA degradation
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111916180
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111916180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111916180
   03041 Spliceosome [BR:lsv03041]
    111916180
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111916180
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111916180
Spliceosome [BR:lsv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111916180
SSDB
Motif
Pfam: LSM M11L
Other DBs
NCBI-GeneID: 111916180
NCBI-ProteinID: XP_023767579
LinkDB
Position
8:188293993..188296136
AA seq 98 aa
MLGGPGLETVVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVIGELDEELDASLDLTELRAHPLKPIIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgctgggtgggcccggacttgaaacagtcgttgatcaaatcatttctgttatcacaaac
gatggacgcaacatagtgggagttttgaaagggttcgatcaagccacaaacataattctt
gatgaatctcatgaaagagtttattccaccaaggaaggtgttcaacaactcgtattaggt
ctctacatcatacggggtgataacataagtgttattggggaattggatgaagagcttgat
gcaagcttggatttaacagaattaagagcccatcctttgaagcctattattcattga

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