Lactuca sativa (garden lettuce): 111916635
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Entry
111916635 CDS
T05352
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111916635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111916635
03012 Translation factors [BR:
lsv03012
]
111916635
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111916635
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111916635
Translation factors [BR:
lsv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111916635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
T2SSE
Rad17
Motif
Other DBs
NCBI-GeneID:
111916635
NCBI-ProteinID:
XP_023768071
LinkDB
All DBs
Position
1:71149855..71156003
Genome browser
AA seq
1019 aa
AA seq
DB search
MRVHLRSFSPRFITNCCYFSTTIQLATTSMSYRPNAQGGRRGGGRGGGRGGGRRGGGGGG
GGGRGEQRWWDPAWRAERLRQTQGEVEAFDKNHWWGKMEQMKSGGDVELIIKHFFSRGDQ
QTLSDMAYQLGLYFHAYNKGKALVVSKVPLPNYRADLDERHGSSQKEIHMSTETERRVEN
LLDSSTATEIVNNFSTTSIQTAKQSPQESDKATGISDNAKKALNIELKERQERQKESDRV
KAMCLFREKLPAHKMKSEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEEISSLRGSEC
NIICTQPRRISAISVAARIANERGENLGQSVGYQIRLESNRSEQTRLLFCTTGVLLRKLV
QDPNLTGISHLLVDEIHERGMNEDFLLIILRDLLPQRPDLRLILMSATINADLFSKYFGN
APTIHIPGLTFPVQELFLEDVLEKTRYVVKSEADNVQGFSRRRRRQQESKTDPITEKFEE
ADINSVYKSYSANTRQSLEAWSGSETDLGLVEATIEYICRHEGPGAILVFLTGWDEISKL
LDNVKANNFLNNPTKFLVLPLHGSMPTINQREIFDRPPSGTRKVVLATNIAESSITIDDV
VYVVDCGKAKETSYDALNKLACLLPSWISKASSHQRRGRAGRVQPGVCYRLYPKMVHDSM
LQYQLPEILRTPLQELCLQIKSLQLGAVGSFLAKALQPPDALSVQNAVELLKTIGALDDR
EELTPLGRHLCTLPLEPNIGKMLLMGSIFQCVNPALTIAAALAYRSPFILPINRKEEADE
AKRSFAGDSCSDHIALLKAFEGWKEAKRSGNEKSFCWENFLSVQTLKMIADMRLQFLDLL
SDIGFIDKSKGANAYNQYSDDMEMVCAILCAGLYPNVVQCKRRGKRTALYTKEVGKVDIH
PASVNAGVHIFPLPFMVYSEKVKTSSVYIRDATNISDYALLMFGGNLVETKNGDGIEMLD
GYLQFSASKSVMGLIKKLRGEVDRLLNRKIEDPKLDVNVEGKGVVAALVELLHNQNVRY
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtgcatttgcgctcgttttctccgcgtttcatcactaattgctgctacttctca
actactattcagttggctaccacatccatgtcttaccgccctaatgctcaaggcggccgt
cgcggtggcggtcgcggaggaggtcgaggaggtggtcgccgtggtggcggcggtggaggt
ggaggtggaagaggtgaacagagatggtgggaccctgcttggcgtgctgagcggcttaga
cagacgcaaggcgaggttgaggcttttgataagaaccactggtggggaaaaatggagcaa
atgaagagcgggggagatgtagagttgataataaaacatttcttcagtcgaggcgatcaa
caaactctttctgatatggcatatcagctgggactttatttccatgcatacaacaaaggc
aaggcacttgtggtgagcaaagttccattaccaaactaccgtgcagatcttgatgagcgc
catggatcttcacagaaagagatacatatgtctacagaaaccgagagaagagttgagaat
ctattggatagttcaacagcaactgaaatagttaacaacttttctaccacatccattcaa
actgccaaacaatcaccccaagaatcagataaagccactggaatctcagataatgctaag
aaggcacttaatattgaactcaaagaaagacaggaaagacagaaggaatctgatcgtgtt
aaggcaatgtgcttattcagagagaagcttcctgcacataaaatgaaatctgagtttcta
aaagctgttgcagaaaaccaggttttagtggtttcaggggaaacaggttgtggtaaaacc
acacagcttcctcagttcattttagaggaagaaatatcatctctacgtggctctgagtgc
aatattatctgcacccaaccccgccgtatctccgccatatcagtagctgctcgaatagcc
aatgagagaggagaaaaccttggtcaatctgttggttatcaaattcgcctagagtcaaat
cgctctgaacagacaagattattattctgcacaacaggagtcttgcttcgaaaattggtt
caagatccaaatctaacaggaatcagccatttgttagttgatgaaattcacgaaagagga
atgaatgaagattttttattaattattttacgcgatcttctccctcaacgtccagattta
cgccttatattaatgagtgctactattaatgctgacttgttctccaaatactttggaaat
gccccaaccattcatatcccgggattgacttttcctgtgcaagaactatttttagaagac
gttttagagaaaacccgttatgtagtgaaatctgaggctgataatgttcagggtttttca
aggagaaggaggagacaacaagagtccaaaactgatcccattactgagaaatttgaggaa
gcggatatcaattctgtatacaaaagctacagtgcaaatactagacaatctcttgaagct
tggagtggttcagaaacagacttgggtttagtggaagcaacaattgagtatatctgtaga
cacgaaggtccaggggcaattctggtatttctcacaggttgggatgaaatctcaaagctt
ctcgacaatgtcaaggctaacaattttcttaataatcccacaaagtttcttgtcctccct
cttcatggctctatgcctaccattaaccaacgtgaaatctttgacagacctccttctgga
acaagaaaagttgttttagcaacgaatattgctgagagtagtataactatagatgatgtg
gtttatgttgtggattgtggaaaagcaaaagagacaagttatgatgctttaaataagctt
gcgtgtttgcttccatcatggatatcaaaagcttcatcacatcagagacgtgggcgggcg
ggtcgtgtacagcctggcgtatgttacagattgtacccaaaaatggtgcatgattccatg
cttcaatatcaactacctgaaattcttagaacaccattgcaagagctttgtttacagata
aaaagtctgcaacttggagctgttggatcttttttggctaaggcacttcagccacctgat
gcgctttctgttcaaaatgctgttgaacttttgaagacgattggggctttagatgataga
gaagagcttacgccacttggacgccacctgtgcactcttcctttagagccgaatattggg
aagatgcttctcatggggtccatttttcaatgtgttaatcctgctttaacaattgctgct
gctcttgcgtatcggagcccgtttattcttccaattaataggaaagaggaagctgatgaa
gctaaaagatcctttgctggtgattcatgcagtgaccacatagctcttcttaaagcattc
gaagggtggaaagaagcaaaacgttccggaaacgaaaaatccttctgttgggaaaacttc
ttgtcagttcaaaccttaaaaatgatagccgacatgcgtctccaatttctcgacctcctt
tcggatatcggcttcatagataaatccaagggcgcaaacgcatataaccaatatagcgat
gacatggaaatggtgtgtgcgatcctatgtgctgggctgtacccgaatgtggtccaatgt
aaaagaagaggaaaacgaacagctctttacacaaaagaagttggaaaagtcgatattcat
ccagcttctgtcaatgctggggtccacatttttcctcttcctttcatggtatacagtgaa
aaagtgaaaacaagcagtgtgtatattcgtgacgccacaaatatatcggactatgctttg
cttatgtttggtggtaatcttgttgaaaccaaaaatggtgatgggattgagatgctggac
ggataccttcagttttcagcatccaagagcgtgatgggattgattaagaaattacgaggc
gaagttgataggttattgaacaggaagattgaagatccgaaattggatgttaatgttgaa
gggaaaggagttgttgctgctcttgttgagttgttgcataaccaaaatgttcgctattaa
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