Lactuca sativa (garden lettuce): 111916646
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Entry
111916646 CDS
T05352
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111916646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111916646
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111916646
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111916646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111916646
NCBI-ProteinID:
XP_023768085
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All DBs
Position
1:complement(71700890..71702037)
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AA seq
279 aa
AA seq
DB search
MSSKGCSSPSPPIVIRSVWAYNLEPEFRLIQSIIDDYPYVSMDTEFPGVVVRPNAGYNYI
CQQTPSDHYLLLKSNVDVLKLIQVGLTLTDANGNLPDLGETDSQTRFIWEFNFKDFDPSR
DQYASDSIELLKRQGIDFQKNHDYGIDSVKFSELMMSSGLVCNELVSWVTFHSAYDFGYL
VKILTGRGLPDEMTLFMELLKTFFGDKVYDVKHLMRYCEGLYGGLDRVAKTLEVERAVGK
SHQAGSDSLLTWHTFQKIRDLCSGGHEKYAGVLYGLEVF
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcaagggctgttcatcaccatcgccaccgattgtgatacgatctgtgtgggcc
tataacctagaaccggaatttcgcttaattcaatccatcatcgacgattacccttacgtt
tcaatggacacggagtttccgggcgtcgttgttcgcccaaacgccggttacaactacatc
tgtcagcagaccccttccgaccactacctcctcctcaaatctaatgttgatgtcttgaaa
cttatccaggtcggtctaaccctcaccgatgcgaacggaaacctccccgatctaggcgaa
accgactcccaaacccgtttcatctgggagttcaacttcaaggattttgatccgtctcgg
gatcagtacgcttctgactcgatcgagctgctgaagcgacaagggattgattttcagaag
aatcacgactacgggatagactcggtcaaattctctgagctgatgatgtcgtcggggttg
gtctgtaacgagcttgtgagctgggttacgtttcacagtgcttacgatttcgggtacttg
gttaagatcttgactgggcgaggtttacccgatgaaatgacgttgtttatggagcttttg
aaaactttctttggggataaggtgtatgatgttaaacacctgatgaggtattgcgaaggt
ctttatggtggtttggatcgggtggctaagaccctcgaggtggagagggcagtcggtaaa
tctcatcaggccgggtcagatagcttactgacatggcacacctttcagaagattagggat
ctttgcagcggtgggcatgagaaatatgctggcgttctttatgggttagaggttttctga
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