Lactuca sativa (garden lettuce): 111916670
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Entry
111916670 CDS
T05352
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111916670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111916670
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111916670
mRNA degradation factors
5'-3' decay
Decapping complex
111916670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
111916670
NCBI-ProteinID:
XP_023768111
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Position
1:complement(72659549..72663009)
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AA seq
367 aa
AA seq
DB search
MSQNGKLMPNLDQNSTKILNLTVLQRMDPYIEEILITAAHVTFYEFNVDLNQWSRKDVEG
SLFVVKRNAQPRFQFIVMNRRNTENLVEDLLGDFEYELQVPYLLYRNPAQEVNGIWFYNP
RECEDVANLFTRILGAYSKVPLKPKVNKSEFEELEAVPTSSVIEGPLEPPFTTSSSTDIP
EDSSFANFFGNTMNLGHHPSNSVNSIPPYHTSTSIPLHSRVASSPSLNHTPLQMPSFPSS
TSGIGIPLHESQDQVNNINNNSTRVTNLIKPLSFFTPSPTPTPTPLMTHSIPPSIPGAPV
QPRSHGIPLLQPFPPPTPPPSLTPGSSSSPNYGSFSREKVRDALLMLAQDNQFIDLFHQA
LQKVHQQ
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaatggcaaattgatgcccaatctggatcaaaacagtacaaaaatccttaac
cttactgtacttcagagaatggatccttacattgaggagatcttaatcaccgccgctcat
gttaccttttacgaattcaacgttgacctcaatcaatggagtcgaaaggatgttgaaggg
tctctctttgtggttaaaaggaatgcccaaccaaggtttcaatttatagtaatgaatcgg
cgaaatacagaaaatctagttgaggatcttttaggggattttgagtatgaacttcaagtt
ccatatctcctgtatagaaatcctgctcaagaggtcaatggtatttggttctacaatcca
cgtgagtgtgaggatgttgcaaatctttttacaaggatactcggtgcatattcaaaggtc
cctctcaaaccaaaagtaaacaaaagtgaatttgaggaacttgaagctgtacccacatct
tcagtaattgaaggaccactagaaccaccatttaccacttcaagctccacagatatccct
gaagattcttcatttgcaaacttctttggtaataccatgaatctaggacaccatccatcc
aactcagtcaattccattccaccataccacacctccacatcaattccattacattcccgt
gttgcatcttccccttcactcaaccatacgccactccaaatgccatcctttccttcatca
acctccggaatcggaatcccactccatgaaagtcaagaccaggtcaacaacatcaacaat
aacagtacacgtgtcactaatcttatcaaacccctttctttttttacaccctctccaact
ccaactccaactccgttgatgacacattccattccaccatctattccaggggctcctgtt
caaccgcgtagccatgggattccattgctccaaccattccccccacccaccccaccccct
tcccttacccctggttccagttcttctccaaattatggatcattcagcagggaaaaagtc
cgtgatgcccttctaatgcttgcccaggataatcagttcattgatttgttccaccaagca
ttacagaaagtacaccaacaatga
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