Lactuca sativa (garden lettuce): 111916844
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Entry
111916844 CDS
T05352
Name
(RefSeq) ubiquitin receptor RAD23d
KO
K10839
UV excision repair protein RAD23
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03420
Nucleotide excision repair
lsv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111916844
09124 Replication and repair
03420 Nucleotide excision repair
111916844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
lsv03051
]
111916844
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111916844
Proteasome [BR:
lsv03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
111916844
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
111916844
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GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
Rad60-SLD_2
Dsc3_N
TECR_N
UBA_3
Ubiquitin_4
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
111916844
NCBI-ProteinID:
XP_023768267
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Position
8:complement(55915681..55919462)
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AA seq
386 aa
AA seq
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MKVFVKTLKGTHFEIQVKPEDTVADVKKNIETVQGADVYPAGQQMLIHQGKVLKDGTTLD
ENKVAENSFIVIMLSKNKTTSGEASRSATAPKAAQPSAAAAAPVPPVAASPQPQAAPVTV
TPPATAPPPSDTAIAPPENVYGQAASHLVAGTNLEGAIQQILDMGGGMWDRDTVIRALRA
AFNNPERAVEYLYSGIPEQAEAPPATAAPPVQGPPAVIPQTTQPPAVLPSGPNANPLDLF
PQGLPDMAANAAAAGGGGGGNLDFLRNSPQFQAFRAMVQANPQILQPMLQELGKQNPHLV
RLIQEHQADFLRLINEPVEAGENPLGQLGAAVPQSVTVTPEERESIERLEAMGFDRALVL
EVFFACNKNEELAANYLLDHMHEFEE
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttttgtcaaaacgttgaaggggactcacttcgaaatccaagtgaaacccgaa
gacacggttgctgatgtgaagaaaaacattgaaactgttcaaggagcagatgtttatcca
gctggacaacaaatgcttatccatcaggggaaagttcttaaagatggaaccactttggat
gaaaacaaagttgctgaaaatagttttattgtcattatgttatccaagaacaaaaccacc
tccggtgaagcttcaagatcagcaaccgccccaaaggcggctcagccaagtgccgccgcc
gccgcccctgttccaccagtggctgcatcccctcagcctcaggcggctcctgttactgtg
acaccacctgccaccgcgcctccaccatcagacaccgccatagctccgccggaaaatgtg
tatgggcaggcggcatcacatcttgttgcaggaaccaatttggaaggtgcaattcagcag
attcttgatatgggtggcgggatgtgggacagggacactgtcattcgtgcccttcgtgcc
gccttcaacaaccctgaaagagctgttgaatatttatattccggtatccctgagcaagct
gaagctccaccagcaaccgccgccccaccagtgcaagggccgccagctgtcatcccccaa
accacacaaccgccagctgtccttccaagtggtccaaatgcaaatcctttggacctcttt
cctcagggtcttcctgatatggccgccaatgctgcggcggcaggtggtggtggtggtggc
aacttggatttcctgaggaacagccctcagtttcaggctttccgggcaatggttcaggcg
aatcctcaaatcttgcagccgatgcttcaagaattggggaagcaaaatccacatcttgtc
agactgattcaagagcaccaagctgatttcctccgtttgatcaatgaacctgttgaagct
ggagagaacccactcgggcagcttggggcagccgtgccacagtcggtgaccgtgacacct
gaggagcgggaatctattgagcgtcttgaagcgatgggatttgatagggcgttggtgttg
gaggtgttttttgcatgcaacaagaatgaagagctggctgctaattacctgttagatcat
atgcatgagtttgaagagtag
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