KEGG   Lactuca sativa (garden lettuce): 111916844
Entry
111916844         CDS       T05352                                 
Name
(RefSeq) ubiquitin receptor RAD23d
  KO
K10839  UV excision repair protein RAD23
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03420  Nucleotide excision repair
lsv04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111916844
  09124 Replication and repair
   03420 Nucleotide excision repair
    111916844
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:lsv03051]
    111916844
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111916844
Proteasome [BR:lsv03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    111916844
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      111916844
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD Rad60-SLD_2 Dsc3_N TECR_N UBA_3 Ubiquitin_4 Ubiquitin_2
Other DBs
NCBI-GeneID: 111916844
NCBI-ProteinID: XP_023768267
LinkDB
Position
8:complement(55915681..55919462)
AA seq 386 aa
MKVFVKTLKGTHFEIQVKPEDTVADVKKNIETVQGADVYPAGQQMLIHQGKVLKDGTTLD
ENKVAENSFIVIMLSKNKTTSGEASRSATAPKAAQPSAAAAAPVPPVAASPQPQAAPVTV
TPPATAPPPSDTAIAPPENVYGQAASHLVAGTNLEGAIQQILDMGGGMWDRDTVIRALRA
AFNNPERAVEYLYSGIPEQAEAPPATAAPPVQGPPAVIPQTTQPPAVLPSGPNANPLDLF
PQGLPDMAANAAAAGGGGGGNLDFLRNSPQFQAFRAMVQANPQILQPMLQELGKQNPHLV
RLIQEHQADFLRLINEPVEAGENPLGQLGAAVPQSVTVTPEERESIERLEAMGFDRALVL
EVFFACNKNEELAANYLLDHMHEFEE
NT seq 1161 nt   +upstreamnt  +downstreamnt
atgaaggtttttgtcaaaacgttgaaggggactcacttcgaaatccaagtgaaacccgaa
gacacggttgctgatgtgaagaaaaacattgaaactgttcaaggagcagatgtttatcca
gctggacaacaaatgcttatccatcaggggaaagttcttaaagatggaaccactttggat
gaaaacaaagttgctgaaaatagttttattgtcattatgttatccaagaacaaaaccacc
tccggtgaagcttcaagatcagcaaccgccccaaaggcggctcagccaagtgccgccgcc
gccgcccctgttccaccagtggctgcatcccctcagcctcaggcggctcctgttactgtg
acaccacctgccaccgcgcctccaccatcagacaccgccatagctccgccggaaaatgtg
tatgggcaggcggcatcacatcttgttgcaggaaccaatttggaaggtgcaattcagcag
attcttgatatgggtggcgggatgtgggacagggacactgtcattcgtgcccttcgtgcc
gccttcaacaaccctgaaagagctgttgaatatttatattccggtatccctgagcaagct
gaagctccaccagcaaccgccgccccaccagtgcaagggccgccagctgtcatcccccaa
accacacaaccgccagctgtccttccaagtggtccaaatgcaaatcctttggacctcttt
cctcagggtcttcctgatatggccgccaatgctgcggcggcaggtggtggtggtggtggc
aacttggatttcctgaggaacagccctcagtttcaggctttccgggcaatggttcaggcg
aatcctcaaatcttgcagccgatgcttcaagaattggggaagcaaaatccacatcttgtc
agactgattcaagagcaccaagctgatttcctccgtttgatcaatgaacctgttgaagct
ggagagaacccactcgggcagcttggggcagccgtgccacagtcggtgaccgtgacacct
gaggagcgggaatctattgagcgtcttgaagcgatgggatttgatagggcgttggtgttg
gaggtgttttttgcatgcaacaagaatgaagagctggctgctaattacctgttagatcat
atgcatgagtttgaagagtag

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