Lactuca sativa (garden lettuce): 111917528
Help
Entry
111917528 CDS
T05352
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111917528
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
Other 90S particles
111917528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
NRDE-2
S1_2
HEPN_RnaseLS
Motif
Other DBs
NCBI-GeneID:
111917528
NCBI-ProteinID:
XP_023768975
LinkDB
All DBs
Position
2:complement(139299456..139309379)
Genome browser
AA seq
1887 aa
AA seq
DB search
MTKPSKKPFNKTSDDRLKTFQKPSKKPFKPLQKSNGAMSKDAQPIHLEDDVPDFPRGGHS
SLSRAEVDKVRAEVDKEFGTETIVLKKKKKEKARNSSQSNEDELGSLFGDSHGGKLPRFA
NKITFKNVTPGMKLWGVISEVNEKDLEVSLPGGLRGLVRASEAIDPQLHDEMEVDTEDEV
LSSIYSVGQLVSCIVLKLDNDNKKEKEKGKHKIWLSLRLSLLHSNFTLDILQEGMVISAY
VKSIEDHGYMLHFGVTSFTGFMQHSSKDTKVVVGKLVQGVVKSIDRTRKVVNLSSDADEV
TKDLKGIPFNLLVPGMMVNARVLSTLENGILLSFLTFFTGTADVFHLGKTLPDSKWKDEY
PQNKKVNARILFIDPSSRAVGLTLNPHLINNNAPPSLVKIGDIFDDSKVIRVDRGSGLLL
EIPSTPVPTPAYVNVSDLSDKEVKKWEKSFKEGSLVRVRVFGFRLLEGLATGVLKTSAFE
GTVFTHSDVRPGMIVKAKIVIIDSFGAIVQFASGVKALCPLRHMSEFEIVKPRKKFQVGA
ELVFRVLGIKSKRITVTHKKTLVKSKLPILSSYTDATEGLWTHGWITKIESHGCFVRFYN
GVQGFVPRAELGLDPGSDVGSMYHVEQVVKCRVTSSVPSSRRINLSFLVTPTPGRVSEDD
TVKLGSIVSGSVERVTPHAIIVNVDVKGYIKGMISPEHLADNHGLASMMKSVLKPGYKFE
KLLVLDVENKNLILTAKYSLVNATQQLPADVSQVYPHSVVHGYICNIIDTGCFVRFIGRL
TGFAPKNKAVDDQRFDLSEVFYVGQSVRSNILEVKSETSRITLSLKQSLCSSTDASFIKE
YFLLEEKIAELHYSDSKSNSLKWVKEFPIGNVIEGTVHEAKESGVIISFQKYNDVFGFIT
HHQFGGSNVDIGSTVKATILDVSKMDRLVDLSLKPELVNRSMETSSSKTPKKMRKRSAYK
DLEMNQTVNAVVEIVKENYLVLSIPDAKFALGYASLNDYNTQAFQQKQFVSGQRVIASVM
SLPDSSTAERLLLLLKSNNEVVDTSSTKRAKKKSSYDVGSTVQAEVTEIKPLELKLKFGS
SLHGRIHITEANDDNILEDPFSNFKIGQTLTTKIVSKTKGENSNNIRWDLSIRPSVLSDE
SYVSKPQDFSYSTGENVTGFVYKVDKDWVWISVTRDIRAQLYILDTSSDPSELQDFQKRF
HVGKRVSGYILNTNKEKRLLRVISHPVVANAASDESFTSHICEGEVVGGRVSKILPGVSG
LIVQIDPHLSGKVHFTELQDPWVPNPLSGYHEGQFVKCKVVEIGHSGTGTVHVDLSLRSF
VNPQSNRYEKIEDLHPNMTIEGYVKNVTPKGCFIMLSRKLDAKILISNLSDDFVSKPEQE
FPIGKLVSGRVVSLEPLSKRIEVTLRSTSGTKSQNSDIGDFSSLNVGEIISGRVKRIESF
GLFIAIDQSKLVGLCHVSELPEGHSEDIETKYKIREKVKAKILKVDEERQRISLGMKASY
FDNQTQEIHNSDADSDSDSESDNPIPTETPPESLIPFSNGKHPALAEVESRASVLPLEVT
LDEEADESPMEDEQAQIPEPLDDKKPEKNENKSKRTKKKETDEREREIRAAEERLLQKDV
PRTADDYEKLIRTSPNSSFIWIKYMAFFLSLNEVEKARSMAERALRTINIREESEKLNVW
VAYFNLENEYGSPPEEAVVKIFQRALQYCDAKKVHYALLGMYERTEQHKLADELLEKMMK
KFKHSCKVWLRKIQRVLKQNEDLVHSVVKRALICLPKHKHIKFITQTAISEFKSGVPDRG
RSMFEGMLREYPKRTDLWSVYLDQEIRIGDVDVIRALFERTICLELPVKKMKFLFKKYLE
FEKSHGDEERVEYVKAEALKFIEKTRG
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaccttcaaagaaacccttcaacaagacatcagacgacaggcttaagacattt
caaaaaccatctaaaaagccttttaaaccacttcaaaaatcaaatggtgccatgtctaaa
gatgctcaaccaattcatcttgaagacgatgtccctgacttccccagaggtgggcatagt
tcactcagcagggcagaggtagataaagttcgggcagaggttgacaaagagtttggaaca
gagactatagttttgaagaagaagaagaaagagaaagctagaaactcgagtcaatcaaat
gaagatgaattgggttctctttttggtgattcacatggtgggaaattgcctagatttgct
aacaagatcactttcaagaatgttactcctggaatgaagctttggggtgtaatttctgaa
gtgaatgaaaaagatcttgaagttagtcttccaggtggccttcgtggattagttcgtgct
tctgaagcaatagatcctcagttacatgatgaaatggaagtggatacagaagatgaagtt
ctttcttccatatatagtgttggtcaattggtttcatgcatagtacttaaattagacaat
gataataagaaagagaaagagaaaggaaagcataaaatctggctatctttgcgtctttct
ttgttgcatagtaacttcactttggacattcttcaagaaggaatggtcattagtgcatat
gtgaaaagcattgaagaccatggttacatgcttcattttggagtcacttcatttactggt
tttatgcaacacagcagcaaagacactaaggtggttgttgggaaacttgtacaaggagtt
gtaaagagtattgatagaacacgtaaagttgtgaatcttagttctgatgctgatgaggtg
acaaaggatcttaaaggcattccattcaatctgcttgttcctggtatgatggttaatgct
cgtgtgctttcaactcttgaaaatggcatcctactctccttcctcaccttctttactgga
actgctgatgtatttcatttgggaaaaactctccctgattcaaagtggaaagacgagtac
cctcaaaataagaaggtcaatgctcggattttgttcattgatccatcaagcagagctgtt
ggtttgactttaaatccccatcttattaataacaatgctccaccttcacttgttaaaatt
ggagatatttttgatgactcaaaagtgatccgagttgataggggatcaggacttctgttg
gaaatcccttcaactccagttccaactccagcatatgtaaatgtgtcagatttgtctgac
aaggaagtcaagaaatgggagaaaagcttcaaagaaggaagccttgttcgtgtgagagtc
tttggattccgactcttggagggccttgctactggtgttttaaagactagtgcatttgaa
ggaactgttttcactcactctgatgtcagacctggaatgatagtgaaggccaaaatcgta
attattgatagttttggtgcaattgtgcaatttgctagtggtgtgaaggcactttgtcct
cttcgtcacatgtcagaatttgaaattgtaaaacctagaaagaagttccaggttggtgct
gagttagtcttccgtgtccttggtatcaagtctaaaagaattacagtcacacacaagaaa
acactcgtaaaatcaaagcttccgattcttagctcatatacagatgcaaccgaaggatta
tggacacatggatggataacaaaaattgaaagccatggatgttttgtcaggttttacaat
ggtgtccaaggatttgtcccaagggctgaacttggtctagatccaggatctgatgtgggt
tcaatgtatcatgttgagcaagttgtgaaatgcagagttacaagctcagttccttcttca
agaagaatcaaccttagtttcttagtgacacctacacctggaagggtatctgaagatgat
acagtgaaacttgggagtattgtatcaggtagtgttgaaagagtaactcctcatgcaata
atagttaatgttgatgttaaaggttacatcaagggcatgatttctcctgaacatctggca
gataaccatgggcttgcttctatgatgaagtctgtattaaagccaggatacaagtttgaa
aaacttttggttttagatgttgagaacaaaaacttgatactaactgcaaagtattctctt
gttaatgcaactcagcaattgcctgcagatgtcagtcaagtttatccacattcagtggtg
catgggtatatctgtaatatcatcgacactggttgttttgttcgcttcattgggcgtttg
actggttttgctcctaaaaacaaggctgttgatgaccaaagatttgatctttctgaagtg
ttttatgttgggcaatctgttcgtagtaacatacttgaagttaaaagtgaaacaagcagg
ataacactatcattgaagcaatcattgtgctcttctacagatgcatctttcattaaagaa
tactttctcttggaggaaaagattgcagagctgcattattctgattcaaagtccaatagt
ctgaaatgggtgaaagagttccctattggtaatgtgattgagggaactgttcatgaagca
aaagaatctggagttattataagctttcagaagtataatgatgtttttggatttatcaca
catcatcaatttggtggatcaaatgtagatattggttcaactgttaaagccacaattctt
gatgtatcaaaaatggatcgccttgtggatttatctttaaagcctgagttagttaacaga
tccatggagacttctagctccaaaactcccaaaaagatgcgcaaaaggtcagcttacaag
gatttggaaatgaatcaaactgtaaatgcagtagtggaaattgtgaaggagaattatttg
gttttatctatcccagatgctaaatttgcattgggatatgcatctttaaatgactacaac
acccaagcattccaacaaaaacaatttgtcagtggacaaagggtgattgcatctgtgatg
tctcttccagattcttcaacagctgaaaggttactattgctgcttaaatccaacaatgag
gttgtggacacttccagcacaaaaagggcaaaaaagaagtctagttatgatgttggatcc
actgttcaagctgaggttacagaaataaagcctcttgaactcaaactgaaatttggctct
agtttacatggaaggatacatatcacagaggcaaacgatgacaacattctagaagatcca
ttcagcaacttcaaaattggtcaaactttgaccacaaagatcgtgtcaaaaaccaagggt
gaaaatagtaacaacattcggtgggatttgtccattagaccctcagtactttcagatgaa
tcatatgtgagtaaaccgcaagatttcagttactcaactggtgaaaatgtaactggattt
gtgtacaaagtggataaagattgggtctggatatcagtaacccgtgacataagagcacag
ctttatattcttgacacctcatctgatccttctgagcttcaagatttccaaaaaaggttt
catgtaggaaaacgggtatccggatatattctaaatactaataaagagaaaagattattg
cgtgtaatatcacatccagtagttgctaatgcagcttcagatgaatctttcacgtctcat
atctgtgaaggtgaagttgttggtggaagagtttccaaaatactgccaggtgtcagtggc
ttaattgtccaaatagatccacatctttcgggtaaagtccatttcacagagttacaagat
ccatgggtaccaaatcctttatctggataccatgaagggcaatttgtgaaatgcaaagtt
gtggaaattggtcattctggaacaggaactgttcatgttgatctctctttgcgttcattt
gtgaatcctcaaagtaatcgttatgaaaagattgaggatcttcaccctaatatgacaata
gaggggtatgtgaagaatgtgacaccaaagggatgtttcattatgctttcaagaaagctt
gatgcaaaaatcctcatctcaaacttatcagatgactttgtgtcaaaacctgaacaagag
tttccaattgggaaacttgtatctggaagggtggtttcattggagcctctgtcaaagaga
attgaagttactcttcggtcaacaagtggtacaaaaagtcaaaattctgacattggtgat
ttcagtagtctgaatgttggagaaattataagtggaagggtgaagcgaattgagtctttt
ggtttgtttattgcaattgatcaatctaaattagttggactatgccatgtgtctgagctc
cctgaaggtcatagtgaagacattgaaacaaagtacaaaattcgggagaaagttaaggcc
aagattttgaaggttgacgaagagagacaaagaatctccttaggaatgaaggcatcatat
ttcgataatcaaacacaagaaattcataattctgatgcagattcagattcagattcggaa
tcagacaatcctattccaactgagacccccccggaatcactgattccattctcaaacggg
aaacatccagcattagctgaagtggaatccagagcttctgtccttcctcttgaagttact
ttagatgaagaagcagatgagtcgcccatggaggatgaacaagctcaaattccagagcct
cttgatgacaaaaaacctgaaaagaatgaaaacaaaagcaaacgaacaaaaaagaaagaa
acagatgaaagggaacgagaaattcgggctgcagaggaaagactattgcagaaagatgtt
ccaagaacagctgatgattatgagaagctgataagaacctccccaaatagcagctttatc
tggataaaatacatggcattttttctctccttgaatgaagttgaaaaggctcgatcaatg
gctgaaagggctttgaggacaattaacatcagagaagagtcagaaaagctgaatgtttgg
gttgcatactttaacttagaaaacgaatacggatcccctccagaggaagcagtggttaaa
atatttcaaagggcattgcaatactgtgacgcgaaaaaagtccattatgcccttctagga
atgtatgaaagaactgaacaacacaaactagcagatgagcttcttgaaaagatgatgaag
aagtttaagcattcatgcaaagtctggttaaggaagattcaaagggtgttgaagcaaaac
gaggatcttgttcattctgttgtgaaacgtgctcttatttgtcttccaaaacacaaacat
attaagttcattacacagactgcaatttctgagtttaaatctggagttcctgatagagga
agatcaatgtttgaaggaatgcttcgagagtaccctaaaagaacagatttgtggagtgtt
tatcttgatcaagagattcggattggagatgtggatgtgattcgtgctttgtttgagaga
actatatgcttagagcttccagttaagaagatgaagtttttatttaaaaagtatcttgaa
tttgagaagtcacatggggatgaggagagagttgaatatgttaaggcggaggctcttaag
tttattgagaaaacccgtggttaa
DBGET
integrated database retrieval system
