Lactuca sativa (garden lettuce): 111917836
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Entry
111917836 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111917836
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111917836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111917836
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111917836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
WD40_WDHD1_1st
WD40_Prp19
WD40
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
EIF3I
WDR90_beta-prop_4th
Tox-PL-2
NOL11_N
Motif
Other DBs
NCBI-GeneID:
111917836
NCBI-ProteinID:
XP_023769244
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Position
7:124662904..124667691
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AA seq
799 aa
AA seq
DB search
MIRGGKSFVSSPPAFSNDAKKLLVCTGNTVSIFSTTTGLQVLELEGHTALVTSITVVPAS
TPATRILCNCWTTSLDGTIKYWDFSMPELMKTISIQLPIYSMVIPSLLAQQSETNEQPSD
IYAYISVKDAKNEANKQKKELSGKILKCNLSKSRLVRGVILSESKKPENISISSTGKYFG
IHEKRKLRIWEVPTKDNKNINHRKLRLSHTKDVTCVAFHPTDRIVAAGDVTGRILIWRGF
GDRTFVGDNGRFLKNDDDEENPGVRGDGDADSCTTWHWHSAEVKVLFFSSDGAYLYSGGK
EGVLVVWQLDTGKKKFLPRIGTPLVNFTTSPDPSLSSISCADNRIHILKMPSMEILKSIS
GIKLPSSIPETLKGSSQDFVFDHTSGLVAVRTENYCIQFYSLFDDREISEVQVCERNHQP
SDDVMTILNKVALSYDGCMMGTVETRMSEEGIGGFVTLKFWERGPHNNDFTLSTVIYEPH
RDAGVSAIAFHPNGSMAVSASYGGDFKVWVRNGNGEDKLRCRWGCHAVGSYRKKAMTAAA
FSGDGSVLAVAAETVITLWDPEKNILVAVIGSALESIVNLSFIGDSKFLASASASRVGSN
PQLSVWSMSKLSLSWSYKLHIEGIACSEKDSLLAVLVVLPESTSKTHNTTGNGAILLFNA
EDPVPIASWFVTKAKGGGVAFIQRSSRELVAYVNGDHEYAIFNPNSEEEEETYERKFRDT
VDQGIGHHIGGYASMYGELPELKMRRKAIEASVAESVMGVSERPWETIFSGPSHSLPPLT
KLCSAFLESLMEKRSGMVE
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgataaggggaggaaagagctttgtttcttcaccacctgcgttttcaaatgacgcaaag
aaactgttggtttgcactggaaacaccgtttccattttcagcaccaccactggtttacag
gtattggaattggaaggtcacacagcactagtgacatctataacagtagtacctgcatcc
actcctgcaaccaggattttatgcaattgctggaccacttcacttgatggcactatcaag
tattgggatttctctatgcctgagttgatgaaaacaattagtatccagcttccaatctac
tcaatggtgattccatccttacttgctcaacagtcagagaccaatgaacagccttctgat
atatatgcttatatctctgtgaaagatgcaaaaaatgaagcaaataagcaaaaaaaagaa
ttaagtggaaagatcctcaagtgtaatttatccaagtctcgcctggttcgtggagtcata
ttgtcagagagtaaaaaacccgagaacataagcatatcttcaactggaaagtactttggc
atccatgaaaaacgcaagcttcgtatatgggaagtgcctacaaaagacaataagaatatt
aatcatcgcaagttaagactatcacacaccaaggacgtgacatgtgtcgcctttcatcca
accgataggattgtggcagctggcgatgtgacagggaggattttaatttggaggggtttt
ggtgataggacatttgtaggtgataatggaagatttttgaagaatgatgatgatgaggaa
aaccctggtgttaggggtgatggagatgctgattcttgcaccacttggcattggcattca
gcagaagtcaaggtcttgtttttctcttcagatggagcctatctgtattcaggtggaaaa
gaaggagtgcttgtggtatggcaactggatactggaaagaagaagttcttacccagaata
gggactccacttgttaatttcacaacttctccagatccttctctttcatctatatcttgt
gcagataatcgaattcatattctgaaaatgccatcaatggagattttgaagtccatttct
gggatcaagcttccttcttcaatcccagagactcttaaaggctcaagtcaagattttgtg
tttgaccatacttcaggattggttgctgttcgtacagagaattattgtattcaattctac
agtttgtttgatgatcgtgagatatcagaggttcaagtttgtgaaagaaatcatcaacca
agtgatgatgtcatgacgattttgaataaagttgcactttcatatgatgggtgtatgatg
ggaactgttgaaaccagaatgtctgaagaaggaataggaggctttgtaacactcaagttt
tgggaacgtgggccacacaacaatgatttcaccttgtctactgttatatatgagccccac
agggatgcaggagtttctgcaattgctttccatccaaatggtagcatggctgtgagtgct
tcttatggtggtgacttcaaggtttgggttagaaatgggaatggtgaagataagttgaga
tgtagatggggatgtcatgctgttggttcatacaggaagaaagctatgactgctgctgca
ttttctggtgatggttctgttttggctgttgctgcagaaactgtcatcacattgtgggac
ccagagaaaaacatactcgtggctgtaattggctctgctcttgagtcgattgtaaatctt
tcatttattggagattccaagtttcttgcatctgcatctgcatcgcgagttggttcaaat
ccacagctttcagtttggagtatgtcaaagctgtcgctatcctggtcttacaagcttcac
atagaaggtatagcatgttcagaaaaagattcccttttagctgtgcttgttgttctcccc
gaatcaacatctaaaactcacaacaccactgggaatggggctattctactattcaatgct
gaagatcctgttcctattgcttcatggtttgtcacaaaggcaaagggagggggggttgca
tttatccaaagaagcagtagagaattggttgcatatgtaaatggtgatcatgagtatgct
atttttaacccaaatagcgaagaagaggaagagacatatgaacgtaaatttagggacaca
gtggatcaggggatagggcatcatattggggggtatgcgtcaatgtatggggagctacct
gagttgaagatgaggaggaaagcaattgaagcatctgttgcagagagtgtgatgggggtt
tcagagaggccatgggagacgatattcagtgggccatctcatagtcttcctcctctcacc
aaactgtgttctgcttttctggaatcattaatggagaaaagaagtggtatggtagagtag
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