Lactuca sativa (garden lettuce): 111918212
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Entry
111918212 CDS
T05352
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111918212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111918212
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111918212
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
TPR_9
TPR_Slam
TPR_2
Iml2-TPR_39
DUF1993
Motif
Other DBs
NCBI-GeneID:
111918212
NCBI-ProteinID:
XP_023769640
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Position
9:complement(200119671..200124759)
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AA seq
737 aa
AA seq
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MEDKYSVESAEALANEALRLPISEAVPIYEQLLATFPTAAKYWKQYVEAHIAVNNDDATK
QIFSRCLLNCLQIPLWRCYINFIRKANEKKGLEGQEETRKAFDFMLSYVGSDIASGPVWT
EYINFLKSLPAQNPQEESQRMIAVRKVYQKAIVTPTHHVEQHWRDYENFENSVSRALAKG
LVSEYQPKYNSARAVYRERKKYVDEIDWNLVAVPPSGSLKEELQWTAWKRFLAFEKENPQ
RIDSVSANKRISFTYEQCLMYLYHYPDIWFDYATWHAKSGSIDSAIKVYQRSLKALPDCA
MLRYAYAELEESRGAIQAAKKVYESLLGDDANATALSHIQFIRFLRRTEGVEAARKHFMD
ARKSPNCTYHVYVAYATMAFCMDKDAKIAHNVFEAGLKRYMHEPGYILEYADFLSRLNDD
RNIRALFERALSSLPPEESIEVWKRFSQFEQTYGDLVSMLKVEQRRKEALARTGENGASL
ALENSLQDVVSRYSFMDLWPCSSKELDHLSRQDWLSSNGNKKVEKSSLVNADKNPGGQIL
SNVSSKVIYPDTSRMLVYDPTKQKPGVSISTPVLPSISTTLLSSSVLATGGAPSVPIVIP
KPLPPALSAFIASLPPVVEGPVPDVDYVLSICLQSNLPIMEQPASIDVNKFKPRDRQHGK
RKDADRQDEDESNTLVQSQVQAPKDAFKIRQMRKSRVGVGVGGAQSGSAVSYATGSVQTG
SASYGSGFSGEHSGSFG
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaaatacagtgttgaatctgcagaagcacttgcgaacgaagcattgcggttg
ccaatatcggaggcagtgcctatctatgagcagctattggccacgtttcccacagcggca
aaatattggaagcaatatgtagaagcacatatagctgtcaataatgatgatgcaacaaaa
cagatattcagcagatgcctattgaattgcttgcagatacctctttggcgttgctatata
aatttcatcagaaaagccaatgagaaaaaggggttagagggtcaagaggaaactaggaaa
gcttttgactttatgttgagttatgttggatctgatattgcttctgggcctgtgtggact
gaatatattaacttcttgaaatctttaccggctcaaaatccacaagaagaatcacaaaga
atgattgctgtaagaaaagtataccaaaaagctattgtgactcctactcatcatgttgaa
caacattggagagactatgagaattttgaaaattcagttagccgtgctctggcgaaagga
ttggtatctgagtatcaaccaaaatataatagtgcaagggctgtttatagagagagaaag
aagtatgttgatgagattgattggaatttggttgctgttccaccttctggttctcttaag
gaagaattgcaatggacagcatggaaaagattcttagcatttgaaaaggagaatcctcaa
aggatagacagtgtgtctgctaacaagcgcatctcatttacttatgagcagtgcctcatg
tatctatatcattaccctgatatatggtttgattatgccacatggcatgcaaaaagtgga
tcaatagactctgcaatcaaagtatatcaacgttcattaaaagctcttcctgattgtgca
atgctaaggtatgcttatgctgagcttgaggagtcgcgaggggcaattcaggctgcaaaa
aaagtatacgaaagccttttaggagatgatgccaatgcaactgcattatcacatatacaa
tttattagattcttgagaagaacagaaggtgttgaagcagctcgcaagcattttatggat
gcaagaaaatctccaaattgtacttaccatgtttatgttgcttatgcaacaatggcattt
tgtatggacaaggacgcaaagattgcacataatgtgtttgaagcagggttgaaaagatac
atgcatgagcctggatacattcttgaatatgcagattttttgtctcgcttaaatgatgat
agaaacattagggctttatttgaacgtgcattgagctcgcttccacctgaagagtctatc
gaggtttggaagaggttttctcagtttgagcagacatatggagatctcgttagcatgttg
aaggtggagcaaagaaggaaagaagctcttgctagaacaggtgaaaatggagcatcatta
gctttagagaattctttacaagatgttgtatcaagatacagttttatggatttgtggcct
tgctcttcaaaagaactcgatcatttatctcgccaagattggctttcaagtaatggaaac
aagaaagttgagaaatcaagtcttgttaatgcagataaaaatccaggaggacaaatttta
tcgaatgtatcttctaaggttatttatccagatacttcaagaatgttggtatatgatcct
actaaacaaaagcctggtgtaagtataagcactcctgttcttccttctatatctaccaca
ttgcttagttctagtgtgttagccactggaggggcgccaagtgtccctattgtcatccca
aaacccctcccccctgccttgtcagcatttatagcaagtttgcctcctgttgtcgagggt
ccggttcctgatgttgactatgttctatcaatatgtttacaaagcaatctaccaattatg
gaacaacctgcctccattgatgtcaacaaatttaaaccaagagacagacaacatggaaag
agaaaagatgctgacagacaagacgaggatgagagtaatacgttggttcaaagtcaagta
caagcgcctaaagatgcatttaagataagacaaatgagaaagtcacgagttggtgttgga
gttggtggggcccaaagtggaagcgctgtgtcatatgctactggtagtgtacaaactgga
tcggcttcgtatggtagtggcttttcaggggaacattctggaagctttggttga
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