KEGG   Lactuca sativa (garden lettuce): 111918252
Entry
111918252         CDS       T05352                                 
Name
(RefSeq) TATA-box-binding protein isoform X1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    111918252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lsv03000]
    111918252
   03021 Transcription machinery [BR:lsv03021]
    111918252
Transcription factors [BR:lsv03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    111918252
Transcription machinery [BR:lsv03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     111918252
  RNA polymerase III system
    TFIIIB
     111918252
  RNA polymerase I system
    SL1/TIF-1B
     111918252
SSDB
Motif
Pfam: TBP DUF3378 DUF4295
Other DBs
NCBI-GeneID: 111918252
NCBI-ProteinID: XP_023769705
LinkDB
Position
9:complement(197846906..197850019)
AA seq 200 aa
MADQVMEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV
IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG
SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDE
TYTAFENIYPVLTEFRKNQQ
NT seq 603 nt   +upstreamnt  +downstreamnt
atggcggatcaagtaatggagggtagtcaaccagttgatctcaccaagcatccatctgga
attgttcctactcttcagaacattgtttctacagtcaatctggattgcaaactagatctt
aaagctattgcactacaagctcgtaatgctgaatataaccccaagcgttttgctgctgtg
atcatgaggataagagaaccaaaaacaacagccctaatttttgcttctggaaagatggtt
tgtacaggagccaagagtgaacaacaatcaaaacttgcagcaaggaagtatgctcggatt
attcaaaaactcgggttcccggcaaaattcaaggactttaagatacaaaatattgtgggg
tcatgtgatgtcaaatttccaattagacttgaaggtcttgcatactctcatggtgccttt
tcaagttatgaaccggaattattcccaggattaatttacaggatgaaacaacccaaaatt
gttctgcttatttttgtttctgggaaaattgttctaacaggagctaaggttagagatgag
acttatactgcattcgagaatatatatccagttttaactgaattcaggaagaatcagcag
tga

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