KEGG   Lactuca sativa (garden lettuce): 111918459
Entry
111918459         CDS       T05352                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 homolog
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111918459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111918459
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111918459
Spliceosome [BR:lsv03041]
 Complex B
  Other components
   Prp19 complex
    111918459
 Complex C
   Prp19-CDC5 complex
    111918459
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    111918459
SSDB
Motif
Pfam: BCAS2 ORC3_ins HMMR_N THOC7 Spectrin
Other DBs
NCBI-GeneID: 111918459
NCBI-ProteinID: XP_023769890
LinkDB
Position
3:complement(248173711..248177482)
AA seq 253 aa
MATSTTINNGEKVLLLDAPPSSRPSWSSSAAQIDALPYIDDEYGDPKVKAEVDRLIEEEM
RCSSKKPSDYLKDLPPVAKFNFENYPMLAREYERVRSGKPMVPLDMSRYGLETPSLNKRN
DETAWKQALQKSQRLLQHQVIRLENLDLMSKYGADVWKQHNQRLEAFLSRMQAQAAELNE
KIETVNRERKYHQQNTAYELNALSAQWKELCYKNIAIEAACVKIEANLEELKAEAAEKGW
NLDVNMENGSSLP
NT seq 762 nt   +upstreamnt  +downstreamnt
atggcgacgtcaaccaccataaacaacggagaaaaggttttgctgctagacgctccgcca
tcttcgcggccttcttggtccagtagtgctgcgcaaatcgacgcattgccctacatcgat
gacgaatacggcgaccccaaagtgaaagccgaagttgaccgtttaatcgaagaagagatg
cgttgtagctctaagaaaccttcggattaccttaaagacctccctcctgttgccaagttt
aattttgagaattatccaatgcttgcaagggagtatgaaagggtgagatctggtaaacca
atggtgcctcttgatatgtcaagatatggacttgagactccatcacttaacaaaaggaat
gatgaaactgcttggaaacaagcactacagaaatctcaacgtttgcttcagcatcaagtt
attaggctggaaaatctggatttaatgtcaaaatatggagctgatgtatggaaacaacac
aatcagagactagaagcatttttatcaagaatgcaagcacaagcagctgagttaaacgaa
aagatagaaaccgttaatcgagaaagaaaatatcatcagcaaaatacagcatatgagctt
aatgcattgtcagcacaatggaaggagctctgttataaaaacatagcaattgaagctgca
tgtgtcaagattgaagccaaccttgaagaattaaaagcagaagctgcagaaaaaggctgg
aatcttgatgttaatatggaaaatggctcttcgttgccttga

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