KEGG   Lactuca sativa (garden lettuce): 111918584
Entry
111918584         CDS       T05352                                 
Name
(RefSeq) protein RDM16 isoform X1
  KO
K12843  U4/U6 small nuclear ribonucleoprotein PRP3
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111918584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111918584
Spliceosome [BR:lsv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    111918584
SSDB
Motif
Pfam: PRP3 Prp3_C
Other DBs
NCBI-GeneID: 111918584
NCBI-ProteinID: XP_023769994
LinkDB
Position
3:90871958..90875677
AA seq 834 aa
MSSRKHRDSDRDRDKDSTKDYKHRSSQHSDDHHRSKQDKHRDADGDDRRRRGERERSEDV
EDRVKRERSYDREGSKDREPREKSVDNRRHHNHKRKDRGGESDEEDRYYDARDKRTRVAD
ERKERRRFEDKVAAAEDDRDREERKERRKFEDKVKKEETSFIDNDEDKLQQEKSNGETMT
TTKSEPKDEYNGGSNANGGAQGSRSKAYGTPHETPLASSHPPLPPPPKVSSISTKHENEG
VNSNRSHEVPGKSSTDGTSTDAGKSGGISLDALSKAKATLLKRKELAEKMKKIPMLNKVA
DSAREGLKAPSSSGLPPPPPQSVTANAAPLGGGLPQLAGLTAPKFEAVKRAQELAAKMGF
RQDPEFAPLINMFPGQLAPEVTGQPKPAKAPVLRLDALGREVDENGNVVNIPKLNNLSTL
KVNINKQKKDAFQILKPELEVDPDKNPHFDPRMGIDKTKLLRPKKMTFQFVEEGKWAKEA
EIIKLKSQFGEAQAREFKAKQAHLAKAKAEPDINPNLIEVAERIIIKEKPKDPIPDIEWW
DVTILEPGTYGNLEEGGPPEDILKKEKITLYREHPRPIEPPAEPAPPPPQPLKLTQKERK
KLRTQRRLATEKNRQEMIRQGLLEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAE
REQAHVDRNIARKLTPAERREKKERKLFDDNNTLETIVSVYKINDLSHPKNRFKVDVNAQ
ENRLSGCAVISEGICVVVVEGGVKSVKRYQKLMLKRIDWSAAVEDENMEEDDGDDGDVKV
KNKCVLVWQGSVARQSFHKFLVHECRTENAARRVFSDAGVGHYWDLAVNFTDEV
NT seq 2505 nt   +upstreamnt  +downstreamnt
atgtcaagccggaaacatagagattccgatcgcgacagggataaggattcaaccaaagac
tacaagcatcgaagcagccagcactctgatgaccaccaccgctccaaacaagataaacac
cgagacgccgatggagatgatcgacgtcgcaggggggaacgcgagagatccgaagatgtt
gaagatcgggttaagcgtgagaggtcatacgacagagaaggcagcaaagatagggaaccg
agagagaaatcggtggataacagacggcatcacaatcacaagaggaaagatagaggtgga
gagagtgatgaggaggatcggtattacgatgctcgcgataaacgaactagggttgcggat
gagaggaaggagaggcggcggtttgaggacaaagttgccgctgctgaggatgacagagac
agagaagagaggaaagagaggaggaaatttgaggataaagttaagaaagaagagaccagt
tttattgataacgatgaagataaactgcaacaagagaaatcaaacggggaaacaatgaca
acgacgaagagcgaacctaaagatgaatacaatggtggttccaatgccaatggtggtgca
cagggatcacgcagtaaggcatatggaaccccacatgagacccctttggcatccagccac
cctcctcttcctcctcctcctaaggtatcttcaatttctaccaaacatgaaaatgaagga
gttaatagtaacagatctcatgaggttcctgggaaatccagtacagatgggacttctaca
gatgctggcaagagtggaggcatctctctcgatgccttatctaaggccaaagcaacttta
ctgaagcgaaaggagcttgcagagaagatgaagaagatccccatgttaaacaaggttgca
gattcagcaagagagggactgaaagctccatctagttcaggattaccccctcctccacca
caatctgtaactgctaatgctgccccacttggtggagggctgccccaacttgcaggacta
actgccccaaaatttgaagctgtaaaacgggcacaagaacttgctgcaaagatgggtttc
agacaagacccggaatttgctccacttataaacatgttcccaggacagctggcaccagag
gtgactggtcaacctaagcctgcaaaagctcctgttcttcgtttggatgcattgggtagg
gaagtagatgaaaatggcaacgtggtaaatataccaaagttaaacaacctgagcacactt
aaagttaacattaacaaacagaagaaagatgcattccagattctgaaaccagaattagaa
gtggaccctgataaaaaccctcactttgatccacgaatgggaatagataaaaccaagctt
ttgagacctaaaaagatgacctttcagtttgttgaggaaggcaaatgggctaaagaggcc
gaaatcattaagttgaagagtcaatttggtgaagcacaagctagagagttcaaagcaaaa
caagcacatcttgctaaggctaaagctgaacctgatatcaacccaaatctcatagaagta
gctgagagaattatcatcaaagaaaagccgaaagaccctattcctgatattgagtggtgg
gatgtgacaattcttgaacctggtacttatggaaacctggaagaaggcgggccaccagaa
gacatactaaaaaaagagaagataactttataccgagaacacccccgcccaatcgagccg
ccagccgaaccggccccgccgccacctcagcccttaaaactcactcaaaaagaacgcaaa
aagctccgcactcaacgccgcctagccactgaaaaaaaccggcaagaaatgatccgccaa
ggccttctagaacccccaaaacccaaagtcaaaatgagcaacctcatgaaagtcctcggc
tcagaagccacccaagaccccacccgcctcgaaatggaaatccgaagcgccgccgccgaa
cgcgaacaagcccacgtcgaccgcaacatcgcccgaaaactaacccccgccgaacgccgc
gagaaaaaagaacgcaaacttttcgatgacaataataccctcgagacgattgtgtccgtg
tataaaatcaacgacctttcacacccgaagaataggtttaaagttgacgtgaacgcacag
gagaatcggttgtcggggtgtgcggtgatttcggagggtatttgtgtggttgtggtggag
ggcggggttaaatcggtaaaaaggtatcagaagttgatgttgaagaggatagattggagt
gcggctgtggaagatgagaatatggaggaggatgatggcgatgatggggatgtgaaggtg
aagaataagtgtgtgttggtgtggcaagggagtgtggcgagacagagtttccataagttt
ttggtgcatgaatgtaggactgagaatgcggctcgaagggtgttttcggatgccggggtt
ggacattattgggatttagccgttaattttacagatgaggtgtga

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