Lactuca sativa (garden lettuce): 111918584
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Entry
111918584 CDS
T05352
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111918584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111918584
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111918584
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
111918584
NCBI-ProteinID:
XP_023769994
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Position
3:90871958..90875677
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AA seq
834 aa
AA seq
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MSSRKHRDSDRDRDKDSTKDYKHRSSQHSDDHHRSKQDKHRDADGDDRRRRGERERSEDV
EDRVKRERSYDREGSKDREPREKSVDNRRHHNHKRKDRGGESDEEDRYYDARDKRTRVAD
ERKERRRFEDKVAAAEDDRDREERKERRKFEDKVKKEETSFIDNDEDKLQQEKSNGETMT
TTKSEPKDEYNGGSNANGGAQGSRSKAYGTPHETPLASSHPPLPPPPKVSSISTKHENEG
VNSNRSHEVPGKSSTDGTSTDAGKSGGISLDALSKAKATLLKRKELAEKMKKIPMLNKVA
DSAREGLKAPSSSGLPPPPPQSVTANAAPLGGGLPQLAGLTAPKFEAVKRAQELAAKMGF
RQDPEFAPLINMFPGQLAPEVTGQPKPAKAPVLRLDALGREVDENGNVVNIPKLNNLSTL
KVNINKQKKDAFQILKPELEVDPDKNPHFDPRMGIDKTKLLRPKKMTFQFVEEGKWAKEA
EIIKLKSQFGEAQAREFKAKQAHLAKAKAEPDINPNLIEVAERIIIKEKPKDPIPDIEWW
DVTILEPGTYGNLEEGGPPEDILKKEKITLYREHPRPIEPPAEPAPPPPQPLKLTQKERK
KLRTQRRLATEKNRQEMIRQGLLEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAE
REQAHVDRNIARKLTPAERREKKERKLFDDNNTLETIVSVYKINDLSHPKNRFKVDVNAQ
ENRLSGCAVISEGICVVVVEGGVKSVKRYQKLMLKRIDWSAAVEDENMEEDDGDDGDVKV
KNKCVLVWQGSVARQSFHKFLVHECRTENAARRVFSDAGVGHYWDLAVNFTDEV
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagccggaaacatagagattccgatcgcgacagggataaggattcaaccaaagac
tacaagcatcgaagcagccagcactctgatgaccaccaccgctccaaacaagataaacac
cgagacgccgatggagatgatcgacgtcgcaggggggaacgcgagagatccgaagatgtt
gaagatcgggttaagcgtgagaggtcatacgacagagaaggcagcaaagatagggaaccg
agagagaaatcggtggataacagacggcatcacaatcacaagaggaaagatagaggtgga
gagagtgatgaggaggatcggtattacgatgctcgcgataaacgaactagggttgcggat
gagaggaaggagaggcggcggtttgaggacaaagttgccgctgctgaggatgacagagac
agagaagagaggaaagagaggaggaaatttgaggataaagttaagaaagaagagaccagt
tttattgataacgatgaagataaactgcaacaagagaaatcaaacggggaaacaatgaca
acgacgaagagcgaacctaaagatgaatacaatggtggttccaatgccaatggtggtgca
cagggatcacgcagtaaggcatatggaaccccacatgagacccctttggcatccagccac
cctcctcttcctcctcctcctaaggtatcttcaatttctaccaaacatgaaaatgaagga
gttaatagtaacagatctcatgaggttcctgggaaatccagtacagatgggacttctaca
gatgctggcaagagtggaggcatctctctcgatgccttatctaaggccaaagcaacttta
ctgaagcgaaaggagcttgcagagaagatgaagaagatccccatgttaaacaaggttgca
gattcagcaagagagggactgaaagctccatctagttcaggattaccccctcctccacca
caatctgtaactgctaatgctgccccacttggtggagggctgccccaacttgcaggacta
actgccccaaaatttgaagctgtaaaacgggcacaagaacttgctgcaaagatgggtttc
agacaagacccggaatttgctccacttataaacatgttcccaggacagctggcaccagag
gtgactggtcaacctaagcctgcaaaagctcctgttcttcgtttggatgcattgggtagg
gaagtagatgaaaatggcaacgtggtaaatataccaaagttaaacaacctgagcacactt
aaagttaacattaacaaacagaagaaagatgcattccagattctgaaaccagaattagaa
gtggaccctgataaaaaccctcactttgatccacgaatgggaatagataaaaccaagctt
ttgagacctaaaaagatgacctttcagtttgttgaggaaggcaaatgggctaaagaggcc
gaaatcattaagttgaagagtcaatttggtgaagcacaagctagagagttcaaagcaaaa
caagcacatcttgctaaggctaaagctgaacctgatatcaacccaaatctcatagaagta
gctgagagaattatcatcaaagaaaagccgaaagaccctattcctgatattgagtggtgg
gatgtgacaattcttgaacctggtacttatggaaacctggaagaaggcgggccaccagaa
gacatactaaaaaaagagaagataactttataccgagaacacccccgcccaatcgagccg
ccagccgaaccggccccgccgccacctcagcccttaaaactcactcaaaaagaacgcaaa
aagctccgcactcaacgccgcctagccactgaaaaaaaccggcaagaaatgatccgccaa
ggccttctagaacccccaaaacccaaagtcaaaatgagcaacctcatgaaagtcctcggc
tcagaagccacccaagaccccacccgcctcgaaatggaaatccgaagcgccgccgccgaa
cgcgaacaagcccacgtcgaccgcaacatcgcccgaaaactaacccccgccgaacgccgc
gagaaaaaagaacgcaaacttttcgatgacaataataccctcgagacgattgtgtccgtg
tataaaatcaacgacctttcacacccgaagaataggtttaaagttgacgtgaacgcacag
gagaatcggttgtcggggtgtgcggtgatttcggagggtatttgtgtggttgtggtggag
ggcggggttaaatcggtaaaaaggtatcagaagttgatgttgaagaggatagattggagt
gcggctgtggaagatgagaatatggaggaggatgatggcgatgatggggatgtgaaggtg
aagaataagtgtgtgttggtgtggcaagggagtgtggcgagacagagtttccataagttt
ttggtgcatgaatgtaggactgagaatgcggctcgaagggtgttttcggatgccggggtt
ggacattattgggatttagccgttaattttacagatgaggtgtga
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