Lactuca sativa (garden lettuce): 111918599
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Entry
111918599 CDS
T05352
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03008
Ribosome biogenesis in eukaryotes
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111918599
09123 Folding, sorting and degradation
03018 RNA degradation
111918599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111918599
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111918599
03009 Ribosome biogenesis [BR:
lsv03009
]
111918599
03016 Transfer RNA biogenesis [BR:
lsv03016
]
111918599
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111918599
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111918599
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
RNases
111918599
Transfer RNA biogenesis [BR:
lsv03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111918599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
111918599
NCBI-ProteinID:
XP_023770012
LinkDB
All DBs
Position
3:complement(228521785..228534545)
Genome browser
AA seq
1041 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVIEEEAVEIDGIKIPVDTSKPNPNQIEYDNLYLDMNGIIH
PCFHPEDRPSPTSFNEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEERLREEFEREGRKLPPKQESQTFDSNVITPGTEFMAVLSVALQYYVHQ
RLNNDPGWKPIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQIGHLAATCEGKAKRKAGEFDEKGNAEVVPKK
PYQFLNIWTLREYLEYEMRIPNPPSKIDFERIVDDFIFICFFVGNDFLPHMPTLEIREGA
INLLLAVYKKEFRSLNGYLTNGSKPDLKKVEQFIQAVGSYEDKIFQKRGRLHQRQAERIK
REKSQAKSQAMRGDDAAPQMEPDSLVPVGRFQGSRLASGPSPSPYQPHSQPRPQKLARLS
TSSSVGAAIVQAESSLENDVLDNKEELKTKLKGILRDKSDAFNSDQPEEDKIKLGVPGWK
ERYYEEKFSASSPEELEEIRRDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDL
KDLGELNISFELGSPFKPFNQLMGVFPAASSHALPEHYRKLMMDPDSPIIDFYPTDFEVD
MNGKRFAWQGIAKLPFIDEDRLLAEVSKVEHTLTEEEARRNSTMCDMLFVALSHTLSPYI
FSLNDRCKQLSAKERVEVKEQIDPLASGGMNGYLSLCGGDPCPPIFSSPVDGMDDIMDNQ
VICAIYRLPEYHNHISRPPAGVKPPKKTVTVDDLQPEPALWHEDSGRKPWENGRSGQNRQ
HNNYNNNNNNNYNNNNQHQHHHHQSGRQLGDAAHRLVNNSLQIKTDRRNSHYHHPYDPRP
PPFHAVRPPPPPAASYHHNQSRMVQSQSGYHPSPQSHNYAQPQPYASPAHANYSSSRSVS
DHQTPGYEYDPRVTHQTPHAVTHYYPPQGYNNSGGYGGAANQTAGWAAARGNQGGDRGGG
RHHHGGGNQFSALNRRPPHRR
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttttaccgctggctagcggagaagtacccaatggtcgttgttgat
gttatagaggaagaagccgtggaaattgacggcattaaaattcccgtcgatacaagtaaa
cctaaccctaatcaaattgagtatgacaacctttatctcgatatgaacggaataatccat
ccctgttttcaccctgaagaccggccttctccaacgtcttttaatgaggtgttccagtgc
atgtttgactacatcgatcggctctttgtgatggtgcgacctaggaaattgctttatatg
gctattgatggtgttgctccaagggcaaaaatgaaccagcagcgatctaggcggtttaga
gcagccaaagatgcagcagatgcggcagctgaggaggagaggcttagagaggagtttgag
agggaaggcagaaagcttcctcccaaacaagaatcacaaactttcgactcaaatgtcatc
acccctgggactgaatttatggctgttctctctgttgctctccagtactatgttcaccaa
agattaaacaatgatcctggatggaagcctataaaggttatcctttcggatgctaatgtt
cctggtgaaggggaacataagataatgtcatatattcgcctgcaaaggaaccttcctggt
tttgatccaaacacccgccattgcttatacggattggatgctgatctcatcatgttggct
ttagctacccatgaagtccacttttcgatacttagagaggttgtatttactcctggacaa
caagacaagtgttttctttgtggtcaaattggtcatttagcagcaacttgtgaaggaaag
gcaaagaggaaagctggggaatttgatgaaaaaggaaatgctgaggttgtgcccaagaaa
ccataccagtttctcaacatatggactcttagagagtaccttgaatatgagatgaggatt
cctaatcctccttccaagattgattttgagcgaatagttgatgactttatcttcatatgt
ttttttgttgggaacgactttctaccacatatgcccactttggaaatacgtgagggtgca
attaatttactgctagcggtgtataaaaaggagtttaggagcctgaatgggtatctgact
aatggaagcaagccagaccttaagaaagtggagcagtttattcaggcggtggggtcatac
gaagataaaatatttcagaaaagagggcggttgcatcagagacaagcggaaaggataaaa
cgtgagaaatctcaagcaaaatctcaagcaatgagaggagatgatgcggcaccacaaatg
gaaccggactcattagttccagtcggccgctttcagggatcacgtcttgcttctggacct
tccccctcaccataccaaccccattctcagccccgaccacaaaaacttgcacgcctctcc
acctcttcttctgttggtgctgccattgttcaagccgagtccagtcttgaaaatgatgta
cttgacaataaggaagaactcaaaacaaaactcaaggggatacttcgtgacaagtctgat
gcttttaattctgaccagccggaggaagataagataaaattgggagtgcctggatggaaa
gagaggtactatgaagagaagttctctgcaagttcccctgaagagcttgaggaaatacgg
agagatgttgtcttaagatacacagaaggcttgtgttgggtgatgcattattactacgaa
ggtgtctgttcctggcagtggttttacccatatcattatgcgccgtttgcttctgatctt
aaggatcttggagaattaaacatcagttttgaactcggttccccattcaaaccgtttaat
caactgatgggcgtgtttcctgctgcaagttcccatgctcttcccgagcattatagaaag
ttgatgatggatccggactcgcctattatcgatttttacccaacagattttgaagtcgac
atgaatgggaagcgttttgcatggcagggaatagcaaagttgcctttcattgatgaagat
cgccttcttgcagaagtgtcaaaagttgagcatactttaacggaggaagaggctcggaga
aacagcacgatgtgtgacatgctttttgtggcattatcacacacattatctccatacata
ttctctctaaacgaccgatgtaagcagttatccgccaaggaacgagttgaagtcaaagaa
caaatcgacccactcgcgagtggtgggatgaatgggtatctatccctttgtggcggagat
ccctgtcctccgatatttagctcacctgttgacggcatggatgacatcatggataatcaa
gtcatatgtgctatttacagactgccggaatatcataaccatatttctcgaccacctgca
ggggtcaaaccaccaaaaaagacggtgacagtggatgatttacaaccagagcctgcttta
tggcatgaagattctggaagaaagccctgggagaacggaaggagtgggcagaacaggcag
cataacaactacaacaataacaataataataattataataataataaccagcaccagcac
caccaccaccaatctgggcggcagcttggagatgctgcacatcgacttgtgaacaatagc
ttacaaataaagacagatagaagaaatagtcattatcatcatccatacgatccacgccca
ccccctttccatgctgttagaccaccaccaccaccagcagcatcctatcatcacaaccaa
agtaggatggtgcagtcgcaatcgggctatcatccttctccacaatcacataactatgcc
caaccccaaccttatgcttcacctgcccatgccaattacagtagtagtaggtcagtttca
gatcatcaaacccctggatacgaatacgatccacgtgtcacccatcaaactccacatgcc
gttactcattactatccaccccagggttacaataacagtggtggctatggtggtgccgcc
aatcagactgcaggatgggcagccgctcgtgggaatcagggtggcgacagaggaggagga
agacatcatcatggcggaggcaaccaattctcagcattgaatagaagaccccctcatcgc
cgttag
DBGET
integrated database retrieval system
