Lactuca sativa (garden lettuce): 111918601
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Entry
111918601 CDS
T05352
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111918601
09122 Translation
03013 Nucleocytoplasmic transport
111918601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111918601
03041 Spliceosome [BR:
lsv03041
]
111918601
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111918601
Spliceosome [BR:
lsv03041
]
Complex C
Other components
EJC/TREX
111918601
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111918601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
111918601
NCBI-ProteinID:
XP_023770014
LinkDB
All DBs
Position
3:complement(228758466..228776350)
Genome browser
AA seq
1781 aa
AA seq
DB search
MSLPALDCKYVTEDCIREWKNGSTSFKPPAPAPVIRYLYELCWNIVRGELPVHRCKPALE
LVEFSDRISDEEVSSNLADIVSQMAQDLTMPGESRARLVKLAKWMVEHSVVPLRLFHERC
EEEFLWDSEMIKIKATDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQGSEVC
SENTSAATVGIIKSLIGHFNLDPNRVFDIVLECFELQPDNNVFLNLIPIFPKSNASQILG
FKFQYYQRLEVNSTVPFGLYQLTAILVKKEFLDLDSIYAHLLPNDDEAFEHYNVFSAKRL
DEANKIGKINLAATGKDLMDDEKQGDVTVDLFAALDMESEAVTERSSELEKSQTLGLLIG
FLFVDDWYHANILFRRLLPLNPVEHIRICDGLFRLIEKTISPAYELVRQRQLQIPEGVTD
LVETESNSSKRSFIDIPKELFEMLTCVGPYLHRDTLLLQKICRVLRGYYLCALKSVNSGD
LEGGVSGNRTPRLHLKEARLNLEEALGACLLPSLQLIPANPAVGQEIWAVLSLLPYEARY
RLYGEWEKDDEASPMVLSAKQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRT
IVHQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLVQGGREKLKDDGLNLSDWLQSL
ASFWGHLCKKYPSMELRGLFQYLVNQLKKGSGIELVLLQELIQQMANVQYTENMTEEQLD
AMAGSETLRYQATSFGATRNNKALIKSTNRLRDSLLPKDEPKLAIPLLLLIAQHRAVVVI
EADSPHIKMVCEQLDRCHGSLLQYVEFLCGAMTPITSYAQLVPDLHDLIHSYHLEPEVAF
LIYRPVMRLFRCQSTSDVLWPLDCDEMTSNLAAGKENEVTDISGKLILDLGPPRKTIMWS
DLLDTVRTVLPCKAWNSLSPDLYATFWGLTLYDLYVPRSRYESEIAKQHAALKALEELSD
NSNSAITKRKKDKERIQESLDRLTSELQKHEENVASVRRRLGREKDKWLSCCPDTLKINM
EFLQRCIFPRCTFSMPDAVYCAMFVNTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEY
EVGRLGRFLFETLKTAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYSQFIKVHWKW
SQRITRLLIQCLESVEYMEIRNALILLTKVSNVFPVTRKSGINLEKRVAKLKSDEREDLK
VLATGVAAALAARKPSWVTEEEFGMGYLDLKPVASKSVYAAAPVTSTTGLNMAPIEAATG
SRSQHHDSSIRETTSTSRPKPWESKHESVTHNNKYDKVKGGSLSNGSDASKTDDSGNNRV
LEENSSKGPAKTAVDSEGRSAAKRSVGGTSVSKQPKQDVVKNDSKPKGIGRTSGVSERDE
KGCNTELPELRNSLIKEESTEAIMDAQKRSSSRPSHSPRTDTVFASSKSNDKPTKRTSPS
GEQDRSAAIKRRKEVHDLEPDRALEKEKHHPLPPLDYDKVTDKPLAKDERFVDREYHSRE
RERERERERFDRSEDAIEKSRDRSMERYSRERSVDRSNKDERSKLRYNDIQVHADDRVRG
TSLPPPPPFPPQHHVLLQSVTTTNKKDEDGDRRFGTTPRHSHSHSQRLSPKHDDRERRRS
EENVFVSQDDKRRREEDIRDKKRDEREKIEDGDREKGNVMKEEVDPNASKRRKLKRDHQS
EGSEYSPVSAAPPLNMNMAPAPYDRDRDRERDGRGGDRKATAALPRQVYMEEPSQSQSQS
RINTMHGKDVPPKTTSSRPMYDREWEDEKSKRLEPKRRHRK
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccggcgctggactgtaaatacgtcaccgaagattgtattcgtgagtggaag
aatggaagcactagctttaaaccacctgctccggcaccggttattagatatctttatgaa
ctttgttggaatatcgttagaggagagctaccggttcacaggtgtaaaccagcactggag
ttggttgagttttctgaccgaatttctgacgaagaagtgtcatcaaatttagctgatatt
gtctcgcaaatggctcaagacctgacaatgcccggggaatctcgtgctcgtctggttaaa
ttggcaaagtggatggtggaacattctgtggtccctttgaggctgttccatgaacggtgt
gaggaagaatttctatgggattcagagatgattaagataaaggccactgatttgaagtca
aaagaggtcagggttaacactcgtcttctttatcaacaaaccaaattcaaccttcttcga
gaagaaagcgaaggctatgccaagctggttacccttctttgtcaaggttctgaagtttgt
tctgaaaatacatcagcagcaacggttggcataatcaagtcgttaatcgggcacttcaat
ttggatccaaaccgagtgtttgacattgtattggagtgtttcgaacttcagccggataac
aatgtcttcttgaacctgatccctattttccccaagtctaatgcttcacaaattcttggg
ttcaagttccaatattatcagcgtttggaagtaaatagtaccgtaccctttgggctctat
cagcttactgcaatactggttaaaaaagaatttcttgatcttgatagcatatatgcacac
ctacttcccaatgacgatgaagcatttgagcattataatgttttttcagcaaagcgactt
gatgaggccaataaaattggcaaaatcaacctcgctgctacaggaaaggatctcatggat
gatgaaaaacaaggagacgtaactgtagatctttttgctgctctagatatggaaagtgag
gctgttacagaacgctcttcagagcttgaaaaaagtcaaactttgggcttgcttattggt
ttcctttttgtggatgactggtatcatgccaatatcctattccgtcgtctcttgcctctc
aatccggttgaacatattcggatttgtgatggactgtttaggcttatcgagaaaacgatt
tctcctgcttatgaacttgtccgtcaacgacagcttcaaattccggagggggttactgat
ctcgtggagacagaaagcaactccagtaaaagatcattcattgatatccctaaagagcta
tttgagatgcttacttgtgtgggaccttatcttcatcgtgatacattgcttctacagaag
atatgccgagtgttgagaggttattatctttgtgcattgaagagtgtgaattctggtgat
ttggaaggcggtgttagtggaaatcgaactccccgcctccacctaaaagaagctagattg
aaccttgaggaagcgcttggtgcatgtctacttccttcactacagttaataccagcaaat
cctgctgttggacaggagatatgggctgtactgagtctcctaccatatgaggcaaggtat
cgtttatatggtgaatgggaaaaggatgatgaggccagccccatggttctctctgctaaa
cagacagcaaagttggacactagacggatcttgaaacggcttgcaaaggaaaatctaaaa
cagcttggaagaatggtggcaaaattagctcatgcgaatcccatgactgtacttagaaca
attgtgcaccagatagaggcatacagggatatgattgctccagttgtagatgcattcaaa
tatttgacacagcttgagtatgatattttggaatatgttgtaatcgaacggcttgtacaa
gggggccgtgaaaagctaaaagatgatggcctaaacttatcagactggcttcagtctttg
gcatcattttggggtcatttgtgtaagaagtacccatcaatggagctcaggggtctattc
cagtaccttgtaaatcagttgaaaaagggcagtgggatcgagcttgttctcctgcaggaa
cttatccagcaaatggctaatgtccagtacacagagaacatgactgaagagcagttggat
gctatggcaggaagtgagacacttcgttatcaggctacttcttttggggcaacccgcaac
aataaggctctaatcaaatccaccaacaggctacgtgattcattgcttccaaaggatgag
ccgaagctggcaattccacttttgctacttattgctcagcatcgtgccgtggttgtgatc
gaggctgactctcctcacattaagatggtctgtgaacagttagacaggtgtcatgggtcc
cttctgcaatacgtggagttcttatgtggtgcaatgactcctataacctcgtatgctcag
ctggttccagatcttcatgatctaatacactcataccaccttgaacctgaggttgcgttc
ttaatttatcggcctgtgatgaggctcttcagatgtcagagtacatctgatgttctttgg
cctttagattgtgatgaaatgacaagcaatctagctgcagggaaagagaatgaagtcaca
gatatctctggaaaacttatacttgatcttggtcctccccggaaaaccataatgtggtca
gatcttcttgataccgttagaacagtgttgccttgtaaagcttggaacagtctctcacct
gatctatatgctaccttttggggtctaaccctgtacgatctttatgttcctagaagtcgt
tacgagtcggagatagccaaacaacatgctgctctcaaagctttggaagagctttccgat
aattcgaattcagcaatcaccaaacggaagaaagacaaagaaagaatacaagaatctttg
gataggctaaccagtgaactccagaaacacgaagaaaacgttgcctctgttcgtagacgt
ttgggtcgtgagaaagataaatggttgagttgttgccccgatactttaaaaatcaacatg
gagttccttcaacgctgtatatttccaaggtgtacgtttagcatgcctgatgctgtatat
tgtgcaatgtttgtcaacacccttcactccctgggcacacctttttttaacacggtcaac
catattgatgttctcatatgtaaaacattacaacccatgatatgctgttgcactgaatat
gaggtcggtcggcttggtagatttctgtttgagactctcaagacagcctattattggaag
agtgatgaatccatatatgaacgtgagtgcggaaacatgcctggattcgctgtctattat
agatacccaaacagccagcgtgtcacgtatagccaattcattaaggtacactggaaatgg
agtcaaaggatcacaagattactgattcagtgcttggaatctgtagagtacatggagatt
cgaaatgctcttattttgcttacaaaagtctcaaatgttttccccgttactagaaaaagt
gggatcaaccttgagaaaagggtagctaaacttaaaagtgacgaaagagaagacctaaag
gtgttggctactggtgttgctgcagccttggctgctcgaaagccttcatgggttacagaa
gaagaatttggtatggggtaccttgatttgaagccagtagcttcaaaatctgtatatgct
gctgctcctgtgacaagtactactggccttaacatggctccaattgaagcagcaactggt
agtagaagtcagcatcatgattcttctatcagagagaccacatcaacatcaagaccaaaa
ccttgggaaagtaaacatgaaagtgtgacacataataataagtatgacaaagtaaaaggt
ggttccctaagtaatggctcagatgcttccaagacggatgattctgggaataatagagtt
ttggaggagaactcttcaaaaggtcctgccaagacagctgtagactctgaggggagatca
gcagcgaagaggtcagtgggtggcacatctgtatcaaagcaaccaaagcaggatgttgta
aaaaacgatagtaaacccaaaggtattggtagaacatcaggagtatctgagcgagacgaa
aaagggtgtaacactgagctgcccgaattaagaaactctcttataaaagaggaatctacg
gaagccatcatggatgcccaaaaacggtcctcatctcgaccctctcattctccacggact
gatactgtttttgcctcctcgaaatctaacgataaacccacaaagagaaccagcccaagc
ggagaacaagaccggtccgctgctattaagcgccgcaaagaggtacatgatttggagccg
gatagagcacttgagaaagagaagcatcacccacttcctcctcttgattatgataaagtt
accgataagcccttggccaaagatgaaagattcgtggaccgcgaataccattcccgagaa
agagaaagagaaagagagagagaaagattcgatcgctcagaggatgcgattgaaaagtca
agagatcggtcaatggaaagatacagcagagagcggtcggttgatagaagtaataaggat
gaaagaagtaaacttcgctataacgatattcaggtgcatgctgatgaccgtgttcgtggc
accagtttgccaccgccgccaccttttccgccacaacatcatgtgctgctccagtccgta
acaactacaaataaaaaagatgaagatggtgatagaaggtttgggacaacacccagacat
tcacattcacattcacagaggttgtctccaaaacatgatgacagggaacgcagacgatct
gaggagaatgttttcgtttctcaagacgataaacgaagaagagaggaagacattcgagat
aaaaagcgagatgaacgtgaaaagattgaggatggagatcgggaaaagggtaatgtgatg
aaagaggaggtggacccgaatgcttcaaaaaggcggaaactgaaacgagatcatcagtca
gagggcagtgagtactctccggtgtcagcagctcctcccctgaatatgaacatggcacca
gctccatatgacagggatagggatagggaaagggatggtaggggaggtgaccgaaaagca
acagctgctcttccacgccaggtctacatggaagaaccaagccaaagccaaagccaaagc
cgtattaatactatgcatggaaaagatgtacccccaaagacgacttcatctcgcccaatg
tatgacagagaatgggaagatgaaaaaagcaagaggcttgaaccgaagagaaggcaccgc
aaatag
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integrated database retrieval system
