Lactuca sativa (garden lettuce): 111919020
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Entry
111919020 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111919020
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111919020
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lsv04812
]
111919020
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
111919020
Membrane trafficking [BR:
lsv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
111919020
Cytoskeleton proteins [BR:
lsv04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
111919020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_5
RuvB_N
AAA_16
AAA_22
NPHP3_N
TIP49
AAA_14
AAA_25
DUF815
AAA_2
MCM
Mg_chelatase
Vps4_C
IstB_IS21
bpMoxR
MIT
AAA_17
RNA_helicase
nSTAND3
AAA_7
AAA_24
AAA_33
AAA_28
ABC_tran
Guanylate_kin
PhoH
AAA_19
AAA_18
NACHT
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
111919020
NCBI-ProteinID:
XP_023770396
LinkDB
All DBs
Position
3:complement(300889040..300894441)
Genome browser
AA seq
492 aa
AA seq
DB search
MSFFRELIDNFSSIFSDSGSPSNRANQIPSSSNYQNRAAMEGVENERAAYKLKGYFDLAK
EEIDKAVRAEEWGLIDDAILHYQNAQRILGEAIATPVPSYISSRELEKVKSYRQKISKWQ
GQVSERLRTLNHRSGGTSINKNTSTHLQATPVSPLKHNPTKSVSQKSSGASSLRGAVTRN
QSNKAMNTTKPVQESNSGLDSKLVEMINSVIVDKSPSVKWEDIAGLEKAKQALLEMVILP
TKRKDLFTGLRRPAKGLLLFGPPGTGKTMLAKAVASESQATFFSISASSLTSKWVGEGEK
LVRTLFAVAVERQPSVIFMDEIDSVMSARTSNEHDASRRLKSEFLVQFDGVTSNSNDLVI
VIGATNKPQELDDAVLRRLVKRIYIPLPNANVRKNLLKHKLKGQAFSLPSGDLERLVKDT
EGYSGSDLQALCEEAAMMPIRELGSNILTVKADQVRRLKYGDFQKAMAVIRPSYVKSKWE
ELDNWNKEFGSN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagttttttccgagaattaatcgacaatttcagctccatattttctgattctggttca
ccatcaaacagagcaaatcaaatccctagttcatccaattatcaaaatcgagcagccatg
gaaggggtggagaatgaacgggcggcgtataagcttaagggatactttgatctggcaaaa
gaagagattgataaagcggttagggcagaagaatggggtttaattgatgatgctatctta
cattatcaaaacgctcaacgtatattaggcgaagccattgctacacctgtaccatcgtat
ataagttccagagaactagagaaggtgaaatcttatcgccaaaagatatcaaaatggcag
ggtcaagtttctgagagactccgcactttaaatcatcgatcaggtggcacgtcaataaac
aagaacacctctactcatttacaagctactccagtctctccattgaagcataatcctaca
aaatcagtgtcacaaaagtcttctggtgcttccagtttacgtggtgctgttacacgaaat
cagagtaacaaagcaatgaacacaacaaagcctgttcaagaatctaatagtggtcttgat
tcaaaattggttgaaatgataaattctgttattgttgacaaaagtccatctgtcaaatgg
gaagatattgctggccttgaaaaagctaaacaagctttgctggaaatggtaatcctgcca
actaaaagaaaagatctattcacaggccttcgtagacctgctaaaggtttgcttcttttt
ggtccacctggcactggtaagaccatgcttgcaaaggcagttgcttcggaatcacaagca
acctttttcagcatctctgcttcctctttaacatcaaaatgggtgggagaaggtgaaaaa
cttgttcggaccctttttgcagttgctgttgaacgacaaccctctgtgatattcatggat
gagattgatagtgtgatgtcagcaagaacatctaatgagcatgatgctagcagaagattg
aagtcagagtttctagttcagtttgatggggttacctcaaactccaatgatctagtaatt
gttatcggtgcaacgaataagccacaagaattagatgatgctgtccttaggagattggtg
aagagaatatacatcccattgccaaatgcaaatgttcgaaaaaatcttctcaagcacaaa
ctcaagggtcaagcattttccttaccaagtggagatttggaaaggcttgtgaaagacaca
gaggggtattctgggagtgatctgcaagctttgtgtgaagaagctgcaatgatgccaata
agagaacttggttcaaacattctcacagtcaaggctgatcaggtacgacgattaaaatat
ggagatttccaaaaagctatggctgtgatccgaccaagctatgtaaaaagcaagtgggaa
gaacttgacaattggaacaaagagtttggatctaactaa
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