Lactuca sativa (garden lettuce): 111919237
Help
Entry
111919237 CDS
T05352
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
lsv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111919237
03083 Polycomb repressive complex
111919237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111919237
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111919237
Histone modification proteins
HAT complexes
HATB complex
111919237
HDAC complexes
Sin3A-HDAC complex
111919237
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111919237
PRC2.2
111919237
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111919237
Heterochromatin formation proteins
Other heterochromatin formation proteins
111919237
Chromatin remodeling factors
NuRD complex
111919237
NuRF complex
111919237
NuRF complex (fruit fly)
111919237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_NUP159_NUP214
MIOS_WD40
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
111919237
NCBI-ProteinID:
XP_023770617
LinkDB
All DBs
Position
9:complement(216438790..216441555)
Genome browser
AA seq
436 aa
AA seq
DB search
MATSEGDMRSEAEDRKINEEYKIWKKNTPFLYDLVMTHPLEWPSLTVEWLPDLEEPAGKD
YSIQKLILGTHTSVGEPNYLMIAKVHLPVKDAEIAVPQYDDSRPDLGGFGCTNGKVQVIQ
KINHDGEVNRARYMPQNPFVIASKTINAEVHVFDYRIHPCESDPPSEREKECKPDLRLKG
HTAEGFGLSWSKFKKGYLLSGSDDSRICLWDVHATPRNKTLDAMQIFKIHKGVVEDVAWH
LKHEYLFGSVGDDKYLHIFDLRSPTFTKPIQTLMAHQNEVMSLSFNPFNEWKLATGSTDK
TVKLFDLRKLTTALHTFSQEDEVIQVAWSPKKESVLASSCLNRRLMIWDISRIGEEQVPE
DVKDGPPELLFIHGGHTSKVSEFSWNSNEEWVIAGVAEDNILQIWKMAENIYHDEEDDWA
DIPEDQPGPSQNKKNK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaagtgaaggtgatatgagaagcgaagccgaggatcgaaaaatcaacgaagaa
tacaagatttggaagaagaacaccccgttcttatacgacctggtcatgactcatccgctt
gaatggccgtcgctcaccgttgaatggctccctgatcttgaagaacccgccggaaaagac
tattccatacagaagttgattctcgggacccacacctccgtcggcgagcctaattacctc
atgatcgctaaggttcacttgcctgtcaaagacgctgaaatcgccgttcctcagtacgac
gatagccgccctgatcttggcggatttggatgcaccaatggcaaggtacaagtgattcag
aaaatcaatcacgatggagaggtgaacagagctcgttatatgcctcaaaaccctttcgtg
atagcatcaaagacgataaatgcagaggttcatgtttttgattatcgcatacatccatgt
gaatctgatccaccttcagaaagagaaaaagaatgcaagcctgatttgagattgaagggt
cacactgctgagggatttggtctttcatggagtaaattcaagaaaggttatttgttgagt
ggttctgatgattctagaatttgtttgtgggatgttcatgcaactccaagaaataagact
cttgatgctatgcaaatcttcaagattcataagggagtcgtagaagatgtagcttggcat
ttaaagcatgaatacttatttggttcagttggtgatgacaaatacttgcacatatttgat
cttcgatctccaacattcaccaaacctatccaaaccctaatggctcatcaaaacgaggtc
atgtcattatcattcaacccttttaacgagtggaaattggcaacggggtcaacagacaag
actgtaaagctattcgatttacgaaaacttacgactgctcttcacacatttagtcaagag
gacgaggtaattcaagttgcatggagtccgaagaaagagtcagttttagcgtctagttgt
cttaatagacgactcatgatatgggatattagtaggattggagaggagcaagtgccggaa
gatgtgaaagatgggccaccggagttgctgtttattcatggtgggcatacgagtaaagtg
tctgaattttcatggaattcaaatgaagagtgggtgattgctggtgttgctgaagataac
attcttcagatatggaagatggctgaaaacatatatcatgatgaagaagatgattgggct
gatatacctgaagatcaacctggcccatctcaaaacaaaaaaaacaaatag
DBGET
integrated database retrieval system
