KEGG   Lactuca sativa (garden lettuce): 111919513
Entry
111919513         CDS       T05352                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
lsv  Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:lsv04812]
    111919513
Cytoskeleton proteins [BR:lsv04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     111919513
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Katanin_con80 Beta-prop_THOC3 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_Gbeta EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_IFT140_1st eIF2A WDR90_beta-prop_4th Beta-prop_WDR41 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_ACSF4 Beta-prop_HPS5 WDR54 Beta-prop_IP5PC_F Tricorn_2nd WD_LRWD1
Other DBs
NCBI-GeneID: 111919513
NCBI-ProteinID: XP_023770834
LinkDB
Position
4:89479803..89484345
AA seq 764 aa
MAKRGYKLQEFVAHSANVNCIKIGKKTRRHFITGGDDEIVNVWSIGKAAPITSLSGHTSP
IESVTFDSTEVLVAAGASSGVVKLWELEETKVFRTLNGHRSYCTSLEFHPFGEFLASGSM
DTNLKIWDIRKKGCIHTYKGHKRAISTIRFTPDGRWVVSGGLDNVVKIWDLTAGKLLHEF
KLHEGHIKSMDFHPIEFLLATGSSDRTVKFWDLETFELIGTTRPEATGVRSVTFHPDGRT
LFCGLDNSLKVYSWEPIICHDAVDIGWSTLGDLCIDDGKLLGCSYYQNSIGVWATDVSHI
EPYAHNMIAMEKAHVEPKTDLQESVIERVKTPRMSFIPSDDDTKDIKNIYVDTAGMTPVV
SRKDGSNTNIQRRLFTDDVAIDSDSSEEKTHNSTSVSEECQKSSSNHEVSIDSSNKRLTP
VKCVAVSNGKTRNLVEKFEKKESQKPNTDNMYVNGDTVEQPPVNVVTCAIPETATSPIKT
PDNDMASLSVSEAKLSPVTFKASPKAKVLSVQRRPVASKRVISEKVRSPPMAVAQRCRAS
SQVIPERSRIRTRTSPLPAVPRQITSTHMTTEKPKFSPLFEDNPQTTGRGLMCKNDDTED
LMIDHELFLSTLQSRLTKLQVIGHFWAQNDTRGAINALQKLPDHAVHADVISVMLENTEC
LNLDHFSCLLPLLLGLLDSNTERHINVSLEMLLKLVAVFGPLITSTISTPPSVGVDLHAE
KRFECCNECHVELQKIQKSLPNVIRRGGLTARSAQELNLVLQLS
NT seq 2295 nt   +upstreamnt  +downstreamnt
atggcgaaacgcggatataaattgcaggaatttgtggcacattctgctaatgtgaactgc
atcaaaattggaaagaaaacacgacgacattttattacaggaggtgatgatgaaattgtg
aatgtttggtcaattgggaaagcagcacccataacgagtttaagtggccacacgagccct
atagaatctgtaacttttgattcaaccgaagttttggtggctgctggagcttcttctggg
gtggtaaagctctgggagttagaagagacaaaggtgtttagaacacttaatggacaccga
tcctactgcacatccttggaattccatccttttggtgagtttcttgcatcaggatccatg
gatacgaatttgaagatatgggatattcgaaagaaaggatgcattcatacatataagggt
cataaacgagcaattagtactatcagatttacccctgatggaagatgggtggtgtctgga
ggacttgataatgttgtaaagatatgggacttaactgctggaaaactcttgcatgagttc
aagttacatgaaggacacattaaatcaatggatttccaccctatcgagtttcttctagca
acaggttcatcagatagaactgtgaaattttgggatttggaaacctttgaattgattgga
acaactcggcctgaggcaacaggggtacgatcagttacatttcatccagatggaagaaca
ctcttttgtggattagacaacagtttaaaggtgtattcatgggagcctataatttgtcat
gatgctgttgatataggatggtcaaccttgggtgacctttgtattgatgatgggaagctt
ttagggtgctcatattatcaaaactctattggagtttgggcaacagatgtttcacatatt
gaaccatatgcacataacatgatagccatggaaaaagctcatgtggagccaaaaactgat
ctccaggaaagtgttatagagagagtcaagactccaagaatgtcatttataccttcagat
gatgacacaaaagatatcaagaatatatatgtagacactgcaggcatgactcctgttgtt
tctagaaaagatggatcaaatacaaacatccagagaaggctttttactgatgatgtggcg
attgattctgattcttcagaggagaaaacacataattccactagtgtttcagaagagtgt
caaaaatcttcatctaaccatgaggtatccattgattcctccaacaaaaggttgacacct
gttaaatgtgttgcagtttcaaatggaaagactcgcaatcttgttgagaaatttgagaaa
aaagaatctcaaaaacctaatacagataacatgtatgtaaatggtgacactgtagaacag
ccacctgtcaatgtggtcacatgtgcaatacctgaaactgccacgtcaccaataaagaca
cctgataatgacatggcgtctttgtcagtatcagaagctaaattgtcacctgtgacattt
aaagcttcccctaaagctaaggtcttatcagttcagagaagacctgttgcttccaaaagg
gtaatatcggaaaaagttaggtcgcctccaatggcagttgcacagagatgtagagcttct
tctcaagtgatacctgaaagaagtagaattagaaccagaacttcacctctgccagctgta
ccaaggcaaattacttctacacatatgacaactgaaaaacctaaattttctcccttgttt
gaggataatccacaaaccacaggaagaggtttgatgtgtaagaatgatgacactgaagat
ttgatgattgatcatgagttatttttaagcactcttcagtctcgccttacaaaacttcag
gttatagggcatttttgggcacaaaatgacacaaggggtgctattaatgcgttgcagaag
ttaccagatcatgcagtacatgcagatgtgattagtgttatgctggaaaacacagagtgt
ttaaatttagatcacttctcttgcttgttgcctttacttttgggattactcgatagcaac
acagagaggcatataaacgtgtcgttggaaatgttattgaagcttgtagctgtctttggg
cctttaatcacctccacaatctcaacacctccatctgtgggtgttgatcttcatgcagaa
aaaagatttgaatgctgcaatgaatgccatgtggagctccaaaagatccagaaaagtctc
ccaaatgttataaggcggggtggtttgacagcaagaagtgcacaagaactaaatcttgta
cttcaactatcgtga

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