Lactuca sativa (garden lettuce): 111919667
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Entry
111919667 CDS
T05352
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111919667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111919667
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
111919667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
111919667
NCBI-ProteinID:
XP_023771002
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Position
8:16479639..16486417
Genome browser
AA seq
1276 aa
AA seq
DB search
MKRKYANLHQNTHKFDSLPFEAYWCGSWKPVECLRIRNGVVSMLIINEGETTEETLPMSD
LRIRSRKANLADCTCFLRPGIDVCVLSTIPSTEEESSNENPKPVWIDARVSSVERKPHEE
DKCVCEFHVSIYMKQGPVGLIKKAVHKETKMLHIDQMSILQKLEGKPCESNHYRWHLSED
CNSRRIFKLFTGKFSSDISWLIVASVFKQLVFDVGSVDNQIVYQIWDGDSEKSFPNSENH
STAVNFKLENGNSIPFLVPFIKPQEEKKAICGVDEFASSSYFDLMGLRRSKRRNVQPDRY
LGDDEVSEAEVDLSRVGLYRPNSSKYEQVPVAFSIQDDHSFTDENKLEYFRKVYKQEGYL
GRQNDTSKSKEVRTEVPYKQDPGEHKQNHKHSNSMASQSHSSRPYVYADSYKPGASDDEG
GDINISDIWAKYFSMQGSSKIHRKKYKAPQMDYDSLGGGLWKGNIVNKRGRKKRGSSGKE
SIYDSRTSFRKSVCASVYRELMSRCMRNIDKSINIEQPAVIDQWKQFQLGKSLELRENNQ
VPLKEEEEEEEEEEEMTEEKELEMLWKEMELALATTYLMEETEGLNEMQKSKSQEPKCRH
DYRLNEQFGIICRLCGHVRSEIKDVSPSFLPGVVWTPSKETRTEEDDSEQNTQDADTRLE
IACRPASSNMSVSDQNENVWALIPNLRDKLRFHQKRAFEFLWRNLAGDIIPSEMEAASKR
RGGCVISHTPGAGKTLLIISFLVSYLKLFPGSRPLVLAPKTTLYTWYKEIIKWEIPIPVY
QIHGGQTYREQVLKNKLKLAPGLPRNQDVMHVLDCLEKIQKWLTTPSVLLMGYTSFLTLT
REDSNYAHRQYMAKVLRQCPGILILDEGHNPRSTKSRLRKALMKVDTPLRVLLSGTLFQN
NFGEYFNTLTLARPRFVNEVLKKLDPKFKSRKKGVLSKFSLENRARKLFVIKIAEQINSN
VQKDRQQGLNILRSLTSKFIDNYEGGSAENLPGLQCYTLMMKSTTIQQEILQKLQDRRPV
YKGFPLELELLITLGSIHPWLIQTTACASQYFEPAELEALNGLKFDLKLGSKVRFVMNLV
PRCLLRKEKVLIFCHNIAPMNLFIETFERFYGWKQGVEVLVLKGELELFERGRVMDKFEE
PGGPSKVMLASINACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQDKVVYVYQL
LATGTLEEEKHSRTTWKEWVSSMIFSEELVEDPSHWSAPKIEDELLREIVEEDRASLFHA
IMKNEKASNMVVRGRE
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggaagtatgctaatttacaccaaaacacacataaatttgattcactacctttt
gaagcttactggtgtggttcatggaagcctgtggagtgcttaagaatcagaaatggagtt
gttagcatgttaatcataaacgaaggagagacaactgaagaaacccttcccatgtcagac
cttcgaataaggtcaagaaaagcaaatttggctgattgcacttgctttttaagacctgga
atagatgtttgtgtgctctctactattccatcaacagaggaggagtcaagcaatgagaac
ccaaaacctgtctggattgatgctagagtaagctcagtagaaaggaagcctcatgaggaa
gataaatgcgtctgtgaattccatgtgagcatctacatgaagcaaggtcctgttgggttg
atcaagaaagcggttcataaagagactaaaatgctacatattgatcagatgtccattctt
caaaagcttgaagggaagccttgtgaaagtaaccattatcgttggcatctttctgaagac
tgcaattcacgtcgaatatttaaactatttacaggaaaattctcctcagatatctcttgg
ttaattgttgcgtctgtcttcaagcagcttgtttttgatgtgggatcagttgacaaccag
atagtgtatcaaatttgggatggtgatagtgagaaaagtttcccaaattctgaaaatcat
tcaactgctgttaacttcaaactagaaaatggaaattcaattcctttccttgtccccttt
ataaaaccccaagaggaaaagaaagctatttgtggtgtggatgaatttgcttcatcatcc
tactttgacctcatgggcttacgcaggtcaaagcgtagaaatgtccagcctgatcgctat
ttaggtgatgatgaagtgtcagaagcagaagttgatttgtctcgcgttggattatacaga
ccaaacagttcaaaatacgagcaagtcccagtggcattctccatccaagatgatcattcg
ttcacagatgaaaataaattggaatatttcaggaaagtatataaacaagagggttatctt
ggaaggcagaatgatactagcaagtcaaaggaggtgagaacagaagttccttacaaacaa
gatccaggagaacacaaacaaaaccacaaacactctaattctatggcttctcaatctcac
tcatcaaggccttacgtatatgctgattcttataagcctggagcttctgatgatgaagga
ggtgatattaatattagtgacatatgggctaaatactttagcatgcaaggttcttccaaa
attcatagaaagaaatacaaagctccccaaatggactatgatagtttaggaggtggatta
tggaaggggaatatagttaataaacgaggtcgtaaaaagcgaggctcttctggaaaggag
agtatctatgattcaaggacttcttttaggaaatctgtttgtgctagtgtttatagagaa
ctaatgagcagatgcatgaggaatatagataaatccatcaacatagaacaaccagctgtg
attgaccagtggaaacagtttcagttgggcaaatccttggaactaagggagaataatcaa
gtacctttgaaagaagaagaagaagaagaagaggaagaagaagagatgacagaagaaaag
gaacttgaaatgttgtggaaggagatggaattagcactcgccacaacatatcttatggaa
gaaacagagggtttaaatgaaatgcaaaaatctaagagccaggagcctaaatgtcgacat
gattacagactcaatgaacagtttgggattatctgtagattatgtggtcatgttagatct
gaaataaaagacgtctcaccctcctttttaccaggtgtagtctggacacctagcaaagaa
acccgaacagaagaagatgattcagagcaaaacacacaagatgcagacacacgtcttgaa
attgcatgtcgtcctgcttcatccaacatgtctgtatcagatcagaacgaaaatgtgtgg
gccctgattcccaaccttagagacaaactacggtttcatcaaaaaagagcgttcgagttt
ctgtggagaaatctagctggcgatatcataccttcagaaatggaagcagccagcaagaga
agaggcggctgtgtcatttcccacactccaggagccgggaagacattgcttataatatcg
tttcttgttagctacttgaagctgtttcccgggtcccgccctttggttctggctccaaaa
acaactttatacacgtggtacaaagaaatcattaaatgggagattccgattccggtgtac
caaatccacggtggtcagacatacagagaacaagttttaaaaaacaaactgaaactggct
cccggccttccccgaaaccaagacgtgatgcatgtgttagactgtttagagaaaatacaa
aaatggctcacaactccaagcgtcctcttaatgggctacacttcctttctaacacttaca
cgtgaagattcaaactatgctcatcgccaatacatggccaaagtccttcgtcaatgtcct
gggattttaattctcgatgaaggccataacccaagaagcacaaagtcaagactaaggaaa
gccttgatgaaagtcgacaccccgttacgtgtccttctatccggtactcttttccagaac
aactttggtgaatacttcaacacgttgacattagccagaccgcgtttcgtcaacgaggtc
ttgaaaaaactagaccccaaattcaagagtagaaagaaaggtgttctttcgaaattttca
ctcgaaaacagagcaagaaaattgtttgttattaaaatagcagaacaaatcaactcaaac
gttcaaaaggacagacaacaagggttgaacattctaagaagcttgacaagcaagttcatc
gacaattacgaaggtggaagtgctgaaaatcttcctggtctgcaatgttacactttaatg
atgaagtccaccaccattcaacaagaaatcttgcaaaagcttcaagacaggagaccagtg
tacaaaggctttcctttagagcttgaacttttaatcacactcgggtccatacatccgtgg
ttgatacaaaccacagcatgtgcaagtcagtattttgaaccagcagaattagaagccctc
aacggactcaaatttgacctcaaactcgggtccaaagtcagatttgtgatgaatttagtc
cctcgttgtctactcagaaaagaaaaggtcctgatattttgccacaatattgctccaatg
aatctatttatagaaacattcgaacgattttatgggtggaaacaaggcgttgaggttcta
gtccttaaaggagagctggagctatttgaaagaggaagagtgatggataaattcgaagag
cctggaggtccttcaaaagtcatgttggcttccatcaatgcatgtgctgaaggaattagt
ctaacagcagcttcacgagtcatcttattggattcagaatggaatccttctaaaagcaaa
caagccattgctcgtgctttccgccctggacaagacaaagtggtttatgtctaccagttg
cttgcaacggggactttagaagaggagaaacacagcaggaccacatggaaagaatgggtg
tcgagtatgatatttagtgaggaactggtggaagatccttctcattggtcagcacccaag
attgaggacgagttgcttagagaaatagtggaagaagatcgagcttcactgtttcatgcc
attatgaagaacgaaaaagcctccaatatggtggttagaggtagagagtaa
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