Lactuca sativa (garden lettuce): 111919682
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Entry
111919682 CDS
T05352
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111919682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111919682
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
111919682
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
WDCP
Motif
Other DBs
NCBI-GeneID:
111919682
NCBI-ProteinID:
XP_023771026
LinkDB
All DBs
Position
8:16875134..16881346
Genome browser
AA seq
1270 aa
AA seq
DB search
MKRKYANLHQNTHQFDPLPFEAYWCGSWVPVESLRIRNGIVSVFIIKEGESTEETIPMSD
LRIRSRKANLADCTCFLRPGIDVCVLSTIPSTEEESTNENPKPVWIDAKISSVERKPHEE
DKCVCEFHVSIYMKQGPVGLIKKAVHKETKMLHIDQMSILQKLELKPCESNHYRWHHSED
CNSRHIFKLFTGKFSSDISWLIVASVYKQLVFDVKPVDNQIVYQIWDGDDDGDGEKSLRN
SENHSTSSALNFKVENGISTPFIVPFSLVEEKKAVCGVDEFASSSYFDLMDVRRSKRRNV
QPERYLGDDNVSESEIDLSRFGLYRPNSSKYEEVPVAFSIQDDHSLKDENKSEYLRKVYN
QEGYLGRLNDTNKSKEVRTEVPYRQDPSMASSSSSRPYIYADTYKPVVSDDEGGDHNTSD
IWAKYFSMQGSSKLNKPKYKAPKMDYDSLGGGLWKGKAIANKGGRKKRGSSGKESIFDTI
TSVKKSDCASIYRELMSRCMRNIDASINMEQPAVIDQWKQFQLGKSLDQRENKEMPKKEE
EDDQEEEEEMTEEKELEMLWKEMELALATTYLMEETEGLNEMQKSKSQEPKCLHDYRLNE
QFGIICRLCGHVRSEIKDISPSFLPGVVWTPSKEIQTEEDDSEQNTQDADTRLEIACLPA
SSIMSVSDQNENVWALIPNLRYKLRFHQKRAFEFLWRNLAGDIIPSEMEAASKRRGGCVI
SHTPGAGKTLLIISFLVSYLKLFPGSRPLVLAPKTTLYTWYKEIIKWEIPIPVYQIHGGQ
TYREQVLKNKLKLAPGLPRNQDVMHVLDCLEKIQKWLTTPSVLLMGYTSFLTLTREDSSY
AHRQYMAKVLRQCPGILILDEGHNPRSTKSRLRKGLMKVHTPLRVLLSGTLFQNNFGEYF
NTLTLARPRFVNEVLKKLDPTFKKRKKGVVSKFSLENRARKLFAIKIAEQINSNVQKDRQ
QGLNILRSLTSRFIDNYEGGSAENLPGLQCYTLMMKSTTIQQEILQKLQDRRPVYKGFPL
ELELLITLGSIHPWLIQTTSCASQYFEPEELKALEGLKSDIRLGSKVRFVMNLVPRCLLR
KEKVLIFCHNIAPMNLFIETFERFYGWKQGVEVLVLKGELELFERGRVMDKFEEPGGPSK
VMLASINACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQDKVVYVYQLLATGTL
EEEKHSRTTWKEWVSSMIFSEELVEDPSHWSAPKIEDELLREIVEEDRASLFHAIMKNEK
ASNMVVRGRE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggaagtacgctaacttacaccaaaacacacatcaatttgatccactgcctttt
gaagcatactggtgtggttcatgggtgcctgtggaaagcttaagaatcagaaatggaatt
gttagcgtgtttatcataaaagaaggagagtcaactgaagaaaccattcccatgtcagac
cttcgaataaggtcaagaaaagcaaatttggctgattgcacttgctttttaagacccgga
atagatgtttgtgtgctttctactattccatcaacagaagaggagtcaaccaacgagaat
ccaaaacctgtctggattgatgctaaaataagttcagtggagaggaagcctcatgaggaa
gataaatgcgtctgtgaattccatgtgagcatctacatgaagcaaggtcctgtcggattg
atcaagaaagcggttcataaagagaccaaaatgctacatattgatcagatgtccattctt
caaaagcttgaattgaagccttgtgaaagcaaccactatcgttggcatcattctgaagac
tgcaattcacgtcatatatttaaactatttacaggaaaattctcttcagatatatcatgg
ttaattgttgcatctgtctacaagcaacttgtttttgatgtgaagccagtggacaaccag
attgtgtatcaaatttgggatggtgatgatgatggtgatggtgaaaagagtttgcgaaat
tctgaaaatcattcaacttcaagtgcacttaatttcaaagtagaaaatggaatttccact
cctttcattgtccccttcagtctagtagaggaaaagaaagctgtttgtggtgttgatgaa
tttgcttcatcatcctactttgacctcatggacgtaaggcgttcaaaacgtaggaatgtc
caacctgaacgctatctgggtgatgataatgtatcagagtcagaaattgatttgtctcgg
tttggattatacaggccaaacagctcaaaatacgaggaagtcccagttgcattctcaatt
caggatgatcattcattgaaagatgaaaataaatcggaataccttaggaaagtatacaat
caagagggttatcttggaaggctgaatgatactaacaagtcaaaggaggtgagaacagaa
gttccttacagacaagatccttctatggcttcttcttcttcatcaaggccttacatatat
gctgatacttataagcctgtagtttctgatgatgaaggaggggatcataatactagtgac
atatgggctaagtacttcagcatgcaaggttcttccaaacttaataaacccaaatataaa
gctcccaaaatggactatgatagtttggggggtggattatggaagggaaaagctatagca
aacaagggaggtcgtaaaaagcgaggttcttctggaaaggagagtatctttgatacaatt
acttctgttaagaaatctgattgtgcaagtatttatagagaattgatgagcagatgcatg
aggaatatagatgcatccatcaacatggaacaaccagctgtgattgaccagtggaaacag
tttcagttgggcaaatccttggaccaaagggagaataaagagatgcctaaaaaagaagaa
gaggacgaccaagaagaagaagaagaaatgacagaagaaaaagaacttgaaatgttgtgg
aaggagatggaattagcacttgccacaacatatcttatggaagaaacagagggtttaaat
gaaatgcaaaaatctaagagccaggaacctaaatgcctacatgattacagactcaatgaa
cagttcgggattatctgtagattatgtggtcatgttagatctgaaataaaagacatctca
ccttcctttttaccaggtgtagtctggacgccaagcaaagaaatccaaacagaagaagat
gattcagagcaaaacacacaagatgcagacacacgtcttgaaattgcatgtcttcctgct
tcatccatcatgtctgtatcagatcagaacgaaaatgtgtgggccctgattccaaacctt
agatacaaactacgttttcaccaaaaaagagctttcgaatttctgtggagaaatctagct
ggcgatatcataccttcagaaatggaagcagccagcaagagaagaggcggctgtgtcatc
tcccacactccaggagccgggaagacattgcttataatatcgtttctggttagctacttg
aagctgtttcccgggtcccgcccgttggttctggctccaaaaacaactttatacacgtgg
tacaaagaaatcattaaatgggagattccgattccggtgtaccaaatccacggtggtcag
acatacagagaacaagttttaaaaaacaaactgaaactggctcccggccttccccgaaac
caagacgtgatgcatgtgttagactgtttagagaaaatacaaaaatggctcacaactcca
agcgtcctcttaatgggctacacttcctttctaacacttactcgtgaagattcaagctat
gctcatcgccaatacatggctaaagtccttcgccaatgtcccgggattttaattctcgat
gaaggccataatccaagaagcacaaagtcaagactaaggaaaggtttgatgaaagtacat
acccctttgagagtgcttctgtcgggtaccctttttcagaacaactttggtgaatacttc
aacactttgacattagccagaccacgttttgtgaacgaggtactcaagaaactagatccc
actttcaagaagagaaagaaaggagtcgtctccaagttttcacttgaaaacagagcaaga
aagctgtttgccatcaagatagcagagcaaatcaactcaaatgttcaaaaggacagacag
cagggcttgaacattctaagaagtttaacaagcagattcatcgacaactatgaaggtggc
agtgctgaaaatctcccaggtctgcaatgttacactttaatgatgaagtccaccaccatt
caacaagaaatcttgcaaaagcttcaagacaggagaccagtgtacaaaggctttccttta
gagcttgaacttttaatcacactcgggtccatacatccctggttgatccaaacgacttca
tgtgcaagccaatattttgaacctgaagaactgaaggcccttgaaggactcaaatccgac
attaggctaggctccaaagtcagatttgtgatgaatttagtccctcgttgtctactcaga
aaagaaaaggtcttgatattttgccacaacattgctccaatgaatctgtttatagaaaca
ttcgagcggttttacgggtggaaacaaggcgtagaggttctagtccttaaaggagaactg
gagctattcgaaagaggaagagtgatggataaattcgaagagcctggaggtccatcgaag
gtcatgttggcttccatcaatgcatgtgctgaaggaattagtctcacagcagcttcacgt
gtcatcctactggattcagaatggaatccttctaaaagcaaacaggcaatcgctcgtgct
ttccgccctggacaagacaaagtggtttatgtctaccagttgcttgcaacagggactcta
gaagaagagaaacacagcaggaccacatggaaagaatgggtgtcgagtatgattttcagt
gaggaactggtggaagatccttctcattggtcagcacccaagattgaagacgagttgctt
agagaaattgtggaagaagatcgagcttcactgtttcatgccattatgaagaacgaaaaa
gcctccaatatggtggttagaggcagagagtaa
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