Lactuca sativa (garden lettuce): 111920560
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Entry
111920560 CDS
T05352
Name
(RefSeq) autophagy-related protein 13a
KO
K08331
autophagy-related protein 13
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
111920560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111920560
03029 Mitochondrial biogenesis [BR:
lsv03029
]
111920560
Membrane trafficking [BR:
lsv04131
]
Autophagy
Autophagosome formation proteins
ULK complex
111920560
Atg1 complex
111920560
Mitochondrial biogenesis [BR:
lsv03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
111920560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
111920560
NCBI-ProteinID:
XP_023771918
LinkDB
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Position
2:complement(236248187..236251073)
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AA seq
621 aa
AA seq
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MDLQYNNPNEHGRNEQIVSQFLLKSLHIVLQSRVPSIGNGNGPITTSTSGHRGNLQSQSD
SQVKKSDKWFNLALGERPSPTGLDSLKFWHRNIMEPMMIDIILVQEMGMGTRSGYGALVE
TVIERWVVQYEYEYSRTSASSSEFYKKTYKKSIILLRSLYTMMRLLPAYRAYRKLLCISS
SEGEGKGKGKGCGFDINYRVSSFSAPFTRAEEESMKHYSFFPIEAHHGRLSISVKYRESL
ADFNLETSASFPPEIITDYVGSPATDPFRAFHFPVMNRVGVNVNANAATSFPSSAAAPPP
QRPHSWTSGLSRGAPFTHNQYSSGSTPPHRSSSGRYDSLTDVYGPNYRPPSFDDYQLSPP
FSPSPPTYLPIQSRLHSETAPVSIPMINRTPSPRYLSPNLSDPANRHLPPPSPRRYDHES
PSGIRSLKKSDMSRIGIGDLSSGSGSGSANHYSSHNPKVVSRDNKDDSGRFSGLLSSSGS
PRVGFSRSSSKLSLQDELDDIDFSCPFIVDDVDTCDSSLNVSESGGKQAGRELSKKSQDA
AVGALVRMLRTAPPLRQDSSCYSLSTSRYALEEPEFNNSNSGLFLSRKTSDALEELKAYT
DIKDLILSKSGTRFLSKEQPL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcaatataacaatcctaatgaacatggaagaaacgagcaaatagtgtctcag
tttctgttgaagagtttgcatattgtgttgcagtcaagggttccttcgattgggaatggg
aatgggcctatcacgacgagtacgagtggtcataggggaaacttacaaagccaaagcgat
agccaagtgaagaagagtgataaatggttcaatttagcattaggtgagcgtcccagtccc
acaggtttagatagtttgaaattttggcacaggaatataatggaacccatgatgatagac
attatactagttcaagaaatgggtatgggtacaaggtctggatatggagcattagttgag
acagttatcgagaggtgggtggttcagtatgagtacgagtattcaaggacgtcggcatct
agcagtgaattttataagaaaacatataagaagtctatcattctgttacgttctctgtat
acaatgatgaggctcctcccagcatacagggcttaccgaaagctgttatgtatttcttca
agtgagggtgagggtaagggtaagggtaagggttgtggttttgatataaattacagggtg
tcctcctttagtgccccgtttacaagggcagaggaagaatcaatgaaacactacagtttc
ttccccatcgaagcccatcatggacgcctgtctatatctgtgaaatatcgggaaagtttg
gctgattttaacttggaaacttcagcatcatttccgcctgagatcattacagattacgtt
ggcagccctgccactgatccttttagggctttccatttcccagtgatgaatagagtgggt
gtgaatgtgaatgctaatgccgccacgtcttttccttcatcggcagcagcacctcctcct
caacggccacatagctggacaagtggcttaagcaggggagcaccattcacacataaccaa
tactcttctggatcaacaccaccacatcgctcttccagtgggcgatatgattcgcttaca
gatgtgtatggtccaaattataggccaccaagctttgatgattatcaactttcaccgcca
ttttcaccatctcccccaacataccttcccattcaatctcggctgcactcagagactgcc
cctgtcagtatccctatgatcaacagaactcctagtcccagatacctctctcctaatctc
tctgatcctgctaaccgacatcttccacccccatcacctagacgatatgatcatgaatct
ccttctggaatcaggtcccttaaaaagtcagacatgtcaaggattgggattggggacttg
agttccggttctggttccgggtcagcaaatcattattctagtcacaaccccaaggtggta
tctagggataacaaagatgattcagggaggttttcaggtttgctttcttcaagtggttcg
cctcgtgttggattctctagaagctccagtaaattgtctctccaggatgagttggatgat
attgacttctcctgtccatttattgtggatgatgttgatacttgtgactcctctctcaat
gtcagtgagagtggtggtaaacaagcaggaagagagttgtctaaaaaatcacaagatgct
gcagtgggtgcacttgtccgcatgctgaggacagcaccaccccttcgacaagattccagt
tgctactccttgagcaccagcagatatgctttagaggagcctgaatttaacaacagcaac
agtggactatttttgtcccgaaagacatcagatgctttagaggagctcaaggcctacaca
gacatcaaagaccttattctctccaaaagtgggactcgctttctttccaaggaacaaccc
ctctga
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