Lactuca sativa (garden lettuce): 111920828
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Entry
111920828 CDS
T05352
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111920828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111920828
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111920828
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111920828
Complex C
U5 SnRNP specific factors
111920828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
Motif
Other DBs
NCBI-GeneID:
111920828
NCBI-ProteinID:
XP_052625106
LinkDB
All DBs
Position
3:10252494..10261977
Genome browser
AA seq
2189 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTSDSRSPQDTHEPTGEPESLYGKIDPKSFGDRA
YRGRPAELDEKITKSKKKKEREPSSLASAEAGNNRQSKRRRLQEESVLTSTEEGVYQPKT
KETRAAYEAMLSVIQTQLGGQPLNIVSGAADEILAVLKNDTLKNPDKKKDIEKLLNSIPN
QVFDQLVSIGRLITDFQDAGGDAAGSNAANGEDALDDDVGVAVEFEENEEDDEKSNLDIV
QEDDEEEEDDVLDRDGNNAMQMGGGMDDEDSQEANEGMTLNVQDIDAYWLQRKISQAYEQ
QIDPQQSQKLAEEVLMILEEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKIVWCTRLAR
AEDQDQRKQIEEQMMGLGPDLAAVLEQLHATRATAKERQKNLEKSIREEARRLKDESGGG
NGDRGRRDVVDRDAENGWLNGQRQLLDLESIAFQQGGLLMANKKCELPLGSYRNHSKGYE
EVHVPALKPKPFAPDEKLVEISTMPSWAQPAFEGMTQLNRVQSKVYETALFKADNLLLCA
PTGAGKTNVAMLTILQQIGLHMNEDGTFNRSDYKIVYVAPMKALVAEIVGNLSNRLEPHY
GIIVKELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTKLLKLLIIDEIHLLHD
NRGPVLESIVARTLRQIETTKEHIRLVGLSATIPNYDDVALFMRVELEKGLFHFDNSYRP
CPLAQQYIGITVKKPLQRFQVMNDICYEKVIGVAGKHQVLIFVHSRKETTKTARAIRDAA
LADDTLGIFLKEDSAAREILRDHTELVKSNDLKDLLPYGLAIHNAGMARADRDLVEVLFA
DGHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFD
TYGEGIVITGHSEMQYYLSLMNQQLPIESQFVAKLADQLNAEIVLGTVQNAKEALNWLRY
TYLYVRMMHNPTLYGLSADALTRDPSLLDWRSDLVHSAATILDKNNLVKYDRKSGYFQVT
DLGRIASYYYITHGTIATYNEHLKPTMTDIELCRLFSLSEEFKYITARQDEKMELAMLLD
RVPNPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVVKR
GWARLAEKALNLCKMINKRIWSVQTPLRQFHGIKNDILMKLEKKDLAWERYYDLSSQELG
ELVRAPKLGKNLHKCIHQFPKLNLAAHVQPITRTILRVELTITPDFQWEDRIHGYVEPFW
VIVEDNDGEYILHNEYFLLKKQYIDEDHTLSFTVPIYEPLPPQYFIKVVSDRWLGSLSVL
PVTFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQEFKHLNPVQTQVFTVLYNTD
DNVLVAAPTGSGKTICAEFAVLRNHQKVSEGVMRAVYIAPVEALAKERYNEWKKKFGDGL
GLRVCELTGETATDLKLLEKGQVIISTPDRWDALSRRWKQRKHIQQVSLFIVDELHLIGG
QGGPVLEVIVSRMRYIASQGHNIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP
LEIHIQGIDIANFEARMQAMSKPTYTAIVQHAKNGKPAIVFVPTRKHARLTAVDLMTYSS
AESTYENGEKPLFLLQSENEISPFIERIKEPMLKETLVYGVGYLHEGLTTTDQDIVRTLF
ETGCIQVCVMSGTMCWGVSLRAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGLASRPLV
DNSGKCVVFCHAPRKEYYKKFLFEAFPVESHLHHHLHDNLNAEVVVEVIANKQDPVDYLT
WTFIYRRLTQNPNYYNLQGVSQRHLSDHLSELVENTLSDLEASNCVTINGDFYLSPNNLG
IIASYYYISYTTIERFSSSLTPKTKLKGLLEILASASEFEQLPVRPGEEDLIRRLIHHQR
FSFENPRYTDPHVKVNTLLQAHFSRQMQMVGGNLGSDQQEVVLSASRLLQAMVDVISSNG
WLSLALLTMEVSQMVTQGMWERDSVLLQLPHFTKDVAKRCQENPGRSIETVFDLVEMEDD
ERRELLQMSDPQLMDIAKFCNRFPNIDLSYDVVDGDNIRAGEEFTMVVTLERDLEGRTEV
GPVDAPRYLKGKEEGWWLVVGDTKSNQLLAIKRVSLQRKAKVKLDNITAPSDAVGKKSFT
LYFMCDSYMGCDQEYSFSIDVKAGRGSDD
NT seq
6570 nt
NT seq
+upstream
nt +downstream
nt
atggcacatttaggtggtggtgctgaggcacatgcccgatttaaacagtatgaatacaga
gccaactcgagccttgtgttgacatcggattctcggtctccacaagatacgcatgagcca
actggcgagcctgagtctttgtatgggaagatagaccccaagagttttggtgaccgtgct
tatagagggagaccagcagagttggatgagaaaatcaccaagtccaagaagaagaaggaa
cgtgaaccatcatcacttgcttctgctgaagctgggaataacagacagagcaagaggcgc
cgtcttcaagaagagagtgtccttacatcaacagaggaaggggtttatcagccaaagacg
aaagaaactcgagctgcatatgaggcaatgcttagtgtcatacagacacaattgggtggt
cagcctttgaatattgtaagtggtgctgcagacgagatcttggctgtgctcaagaatgat
actttgaagaacccggacaagaagaaggatattgagaaattgctaaactctataccaaac
caggtgtttgatcagttagtctctattgggaggcttataacagattttcaagatgcaggt
ggtgatgctgctgggtctaatgctgcaaatggtgaagatgctctggatgatgatgttggt
gtagctgttgaattcgaagagaatgaagaggatgatgaaaagagtaatcttgatattgta
caggaagatgacgaggaggaagaagatgatgttttggacagagatggaaacaatgctatg
caaatgggtgggggtatggatgatgaagactcacaagaagctaatgagggtatgacgctt
aatgtacaggacattgatgcttattggcttcagaggaagatctcccaggcttatgagcag
cagattgatccacagcaaagccagaagcttgctgaagaggtactgatgattcttgaagaa
ggtgatgaccgtgaagtcgaaacgaagctattggtgcatcttcagtttgataagttcagt
ctgataaagtaccttttgaggaacagactgaagattgtgtggtgtacccgtcttgcaagg
gctgaagatcaagatcaaaggaagcaaattgaagaacaaatgatgggactggggcctgat
ttggctgcagtattggaacaactgcatgccacaagggcaacagcaaaagagaggcagaag
aacttggagaaaagcataagagaagaagcaaggcggttgaaggatgagagtggtggtgga
aatggggatcgtggtcgaagggatgttgttgatagggatgctgaaaacggttggttaaat
ggtcaaagacagttgcttgatcttgagagcatcgcgtttcagcaaggtggtcttttgatg
gcaaataagaagtgtgagcttcctttaggctcttacagaaatcacagcaagggatatgaa
gaggttcatgtgccagcattgaagcccaaaccttttgctcctgatgagaagcttgtagag
atatcaaccatgccaagctgggcacaaccagcttttgaggggatgactcagttaaatagg
gttcagagtaaagtttatgagacagccctatttaaagcagacaatcttttactctgtgcc
cccactggagcagggaaaaccaatgttgctatgctcacgattctgcagcagataggttta
catatgaatgaggatggtacgttcaaccgcagtgactacaagattgtctatgtggcacca
atgaaagcccttgttgctgaaatcgttggtaatctgtctaatcgtttggagccccactat
ggcatcattgtgaaggagttgagtggagatcagtctttgacccgtcaacagattgaggaa
acacaaatcattgtcaccactccagagaagtgggatattataacaagaaaatcaggagac
cgcacttatactaagcttttgaagcttctaattattgatgaaattcatcttctccatgat
aatagaggacctgttctggagagtattgtggcaagaactcttagacaaattgagaccaca
aaggaacatattcggttggttgggttatctgccacaattcccaattatgatgatgttgcg
ttatttatgcgggttgagttggagaaaggcctgtttcattttgacaatagttacagacct
tgcccacttgctcagcagtatattggaattacggtaaagaagccattgcagagatttcaa
gtgatgaatgatatttgttatgaaaaggtgattggagtggctggaaagcatcaggtgctt
atctttgttcattcaaggaaagaaacaacaaagactgcgcgtgcaattagagacgctgct
cttgctgatgacaccctggggatctttttgaaagaggatagtgcagctcgtgagattctg
cgtgatcatactgagctggtgaaaagcaatgatcttaaggatttgttaccttatggtctt
gcaattcataatgcaggaatggccagggctgaccgtgatcttgttgaggtattatttgct
gatggacacattcaagtacttgtttcaacagctactcttgcatggggtgtgaacttgcct
gcccacactgtgattatcaaaggaacccagatttataatccagaaaaaggagcctggaca
gagcttagtcctctagatgtcatgcagatgttgggtcgtgcagggagaccacagtttgat
acttatggtgaaggtattgttattactggacacagtgagatgcaatactatctttcactg
atgaatcaacagcttcctattgaaagtcagtttgtagccaagttggctgatcagttgaat
gcagaaatagtccttggaaccgtgcagaatgcaaaagaagccctcaattggcttcgttat
acttatttatacgttcgtatgatgcacaaccctacactctatggtttatcagcggatgct
ctgacaagagatccttcacttctggattggagatctgatctggttcattctgctgccaca
atactggataaaaacaatctggtgaagtatgatagaaaaagtgggtattttcaggttact
gatttgggtcgaattgcaagttattactacataactcatggaactattgctacttacaat
gagcatttgaagcctaccatgaccgacattgagctttgtagattgttttcactgagcgag
gagttcaaatacataacagcaagacaggatgagaagatggagcttgcaatgcttttggac
cgtgttcctaatcccatcaaggaaagtttggaagagcccagtgcaaagatcaatgtccta
ctccaggcatatatttctcagttaaagcttgaaggactttctttgacatctgacatggtg
ttcataactcagagcgcaggacgtcttatgcgggctctttttgagattgtagtgaaaaga
gggtgggcccggttagccgagaaagccttgaacttgtgcaaaatgataaacaagaggatc
tggagcgtacaaacccctttacgccaatttcacgggattaaaaatgacatattgatgaaa
ctggagaagaaggatttggcatgggaaaggtattatgatctgtcatcacaggagctggga
gagcttgttcgagcccccaaattggggaaaaatcttcacaagtgcattcaccaattccca
aaacttaatcttgcagcacatgttcaaccaatcacccgcaccatcttgagggtggaactc
actatcactcctgattttcaatgggaagacaggattcatgggtatgtggaaccattttgg
gtgattgtagaagataatgatggggaatacatactccataacgagtatttcttgttgaag
aaacagtatattgacgaggaccacactttgagtttcacagtcccgatttatgaacctttg
ccacctcagtacttcattaaggttgtctcagacagatggcttggatccctgtctgttttg
cctgttactttccgccacctaatcttaccagaaaagtatcctccaccaacagagctgctg
gacttgcagccactccctgtgactgctttgagaaatcctttatacgaagccctttatcaa
gaattcaaacacttaaaccctgtccaaactcaagtcttcacagttctatacaacactgat
gacaatgtgttggttgctgcaccaactggcagtgggaagaccatttgtgcagagtttgca
gttttaaggaaccatcagaaagtttcagagggagtgatgcgtgctgtttacattgctcct
gttgaagcacttgccaaggagcgatataatgaatggaaaaagaaatttggagatggtctt
gggctgagggtgtgtgagttgacaggggaaacagccacagatttgaagcttcttgaaaaa
gggcaggtgataatcagcactccggatagatgggatgctttgtctcgtagatggaagcag
cgaaagcatattcagcaggtaagtctttttattgttgatgagttgcatttgattgggggt
caaggtgggccagtgttggaggtgatagtctctaggatgagatacattgctagtcaaggt
cataacattcgaatagtggcactatccacttcacttgcaaatgccaaagatttaggtgaa
tggattggggccacatcacatggtcttttcaatttcccaccaggtgttaggcctgtacct
ttggaaatccatattcaggggatagacatagccaactttgaagccagaatgcaagccatg
agcaaacctacttacactgctattgtccaacatgccaagaatggaaaaccagccattgtc
tttgttccaacaaggaagcatgcaaggttaactgctgtggatctgatgacatattcgagt
gctgaaagtacatacgagaatggagagaagcctttgttcttacttcaatctgaaaatgag
ataagcccgtttattgagcggattaaagaacccatgttgaaggaaactctggtctatggt
gtgggatatctgcatgagggtctaaccacaactgaccaagatatagtcaggacactgttt
gaaactggttgtattcaggtatgtgtgatgagtggtacaatgtgttggggggtttctctt
cgtgcacatttggtggtggttatgggaacgcagtactatgatggccgagaaaacgcacac
accgattatccggttactgatcttcttcagatgatgggccttgcaagtcggcctcttgtg
gacaattctggtaaatgtgtcgtcttttgccatgcaccacgtaaggagtactacaaaaag
ttcttattcgaagcattcccagttgaaagccatctgcatcaccacctacatgataatctg
aatgctgaggtggttgttgaagtgattgccaacaagcaagatcctgttgattatctgacc
tggacattcatatacaggaggcttacacagaacccgaattactacaatcttcaaggtgtg
agtcaaaggcatctctcggatcacctgtctgaacttgtggagaacactttaagcgacctg
gaagcgagtaattgtgttacaatcaatggtgatttttatctttcccctaacaatctgggt
attattgcttcttattattacatcagttacactacaatagaacgattcagctcttcgttg
accccaaagacaaagctgaagggccttttagagattttggcttctgcttcagagtttgaa
caacttccggtacgccctggagaagaggatttgatacgtaggttgatccatcatcaaaga
ttttcatttgagaaccctagatacacggatcctcatgtgaaggtaaacacactgcttcaa
gctcacttttccaggcagatgcagatggtgggaggaaacctaggttctgaccagcaagaa
gtggtgctatctgcaagtaggttgcttcaggccatggttgatgttatttcaagcaacggg
tggcttagcttggctcttctgaccatggaagtgagccagatggtgacacaaggcatgtgg
gagagagactctgttctgttacagctgcctcattttacaaaagatgtagccaagagatgc
caggaaaaccctggaaggagtatcgagactgtgtttgacttggtggaaatggaggacgat
gagagaagggagctgttacagatgtcagatcctcagctcatggatatcgcaaagttttgc
aaccggttccctaatatcgatttgtcgtacgatgtggtggatggtgacaacattagggct
ggagaggagtttacgatggtggtgacactggaaagggatttggagggtaggacagaggtg
ggaccggtggatgccccgaggtatctgaaagggaaagaggaagggtggtggttggtggtt
ggtgacacaaagagcaaccagttgcttgcaatcaagagggtttcgttgcagaggaaggcc
aaggtgaagcttgataacataactgctcctagcgacgcagttgggaagaagagctttact
ctgtatttcatgtgtgactcttacatgggatgtgaccaggagtatagcttttctattgat
gtcaaagcaggaagaggctcagatgattga
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integrated database retrieval system
