Lactuca sativa (garden lettuce): 111921358
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Entry
111921358 CDS
T05352
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111921358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111921358
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111921358
mRNA degradation factors
5'-3' decay
Lsm complex
111921358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
111921358
NCBI-ProteinID:
XP_023772681
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All DBs
Position
4:complement(161043462..161045406)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELELEKEELPPHMTRVSETEIKRAQKVEREASDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggcaggaccggaagatatttatctgtcaacttctcttgcaagctatctcgac
aagaagcttcttgtattgctgagagatggcaggaagctattggggatacttcggtctttt
gatcaatttgcaaatgctgttcttgaaggtgcatgtgaaagagtaattgttggtgacctt
tattgtgacattccattaggtctttatgtaattcgtggtgaaaatgttgtcttaattggg
gagctggaattggagaaggaagaacttccccctcatatgactcgtgtttcagaaactgag
ataaaaagggctcagaaggtggagagggaggcttcggatttgaagggtacaatgagaaaa
aggatggagtttcttgatatggattaa
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