KEGG   Lactuca sativa (garden lettuce): 111921358
Entry
111921358         CDS       T05352                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111921358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111921358
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111921358
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111921358
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 111921358
NCBI-ProteinID: XP_023772681
LinkDB
Position
4:complement(161043462..161045406)
AA seq 128 aa
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELELEKEELPPHMTRVSETEIKRAQKVEREASDLKGTMRK
RMEFLDMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcgtgggcaggaccggaagatatttatctgtcaacttctcttgcaagctatctcgac
aagaagcttcttgtattgctgagagatggcaggaagctattggggatacttcggtctttt
gatcaatttgcaaatgctgttcttgaaggtgcatgtgaaagagtaattgttggtgacctt
tattgtgacattccattaggtctttatgtaattcgtggtgaaaatgttgtcttaattggg
gagctggaattggagaaggaagaacttccccctcatatgactcgtgtttcagaaactgag
ataaaaagggctcagaaggtggagagggaggcttcggatttgaagggtacaatgagaaaa
aggatggagtttcttgatatggattaa

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