Lactuca sativa (garden lettuce): 111921587
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Entry
111921587 CDS
T05352
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsv03000
]
111921587
03036 Chromosome and associated proteins [BR:
lsv03036
]
111921587
Transcription factors [BR:
lsv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
111921587
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
111921587
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
YL1
CDC45
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
111921587
NCBI-ProteinID:
XP_023772931
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All DBs
Position
2:183993444..183997689
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AA seq
651 aa
AA seq
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MADGHLFNNISLVGRGGANPGQLRVHSRGLVWKKQGGGKAVEVDKSDIVRITWMKVPRSN
QLGVQIKDGLKYKFTGFRDQDVPSLTNFFQNSCGITPEEKQLSVSGKNWGELDINGNMLS
FLVGGKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFV
GDDNHPPAQIFRDKIMSMADVGAGGEEAVVTFETITILTPRGRYSVELHLSFLRLQGQAT
DFKIQYSSIVRVFVLPKSNQPHTFVVVTLDPPIRKGQTMYPHIVMQFETDYVVESTLMMN
EDLYSSKYKDKLEPSYKGLIHEVFTMILRGLSGTKLTRPGKFRSCQDGYAVKSSLKAEDG
VLYPLEKSFFFLPKPPTLILHDEIDYVEFERHAAGGSNMHYFDLLIRLKSEHEHLFRNIQ
RNEYHNLFDFISSKGLKIMNLGGGVQAADGVAAVLRDEEDDAVDPHLERIKNEAGEEESD
EEDEDFVAEKDDSGSPTDDSGGDDSDGSDSGGEKEQQRIPKKESKKEASGSKTAAASSSK
KKSKGGAGDEDGAKKKKQKKKKDPNAPKRAMSGFMFFSQLERENLKKDIPGIGFKEIGRE
LGERWNKLTAEEKAPYEARAVADRKRYQNEKTGYKNAQPAPMDLVDESDSN
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtcacttgttcaataacatctctcttgtcggtcgcggcggcgccaatcca
gggcaacttagggttcattcacgtggtctggtgtggaagaaacaaggtggtggcaaagct
gtggaagtagataagtctgatatcgtgcgaataacatggatgaaggtcccaagaagcaat
caacttggtgtgcagattaaagatggtctcaaatataaattcactggtttccgtgatcag
gatgtgcctagcctgaccaattttttccaaaactcttgtggcataacaccagaagaaaag
cagctttcagttagtggaaagaattggggagaacttgatataaatggtaatatgctttct
tttcttgttggtggaaagcaagcatttgaagtatcattagctgatgtgtcccagacacag
cttcaaggaaaaaatgatgtcatcttggagttccatgtggatgacacaactggtgcaaat
gagaaagattctttgatggaaatgagtttccacattcccagctcaaacactcagtttgtt
ggggatgataatcacccccctgcacaaattttccgagataaaatcatgtccatggcggat
gttggggctgggggtgaagaagctgttgtcacatttgaaaccattaccattcttacacca
aggggtcgatacagtgttgaacttcacctttcctttttacggcttcaagggcaagccacc
gatttcaaaattcaatacagcagcatagtccgcgtttttgttttgcctaagtctaaccaa
cctcacacgtttgttgttgtgactctggaccctcctatccgtaaaggtcaaacaatgtac
ccacatattgtaatgcagtttgaaactgattatgtggttgagagcactttgatgatgaat
gaagacttgtattctagcaaatacaaagacaaattagaaccatcatataagggactgatt
catgaagtgttcacaatgatcttgcgagggttatctggtacaaagctcacaagacccgga
aagttccggagctgtcaggatggttatgctgtgaagtcttcattaaaagctgaagatgga
gttctttatcctcttgaaaagagctttttcttcttaccaaaacctcctacactaattctt
catgatgagattgactatgtggaatttgagaggcatgctgctggaggatcaaacatgcat
tactttgatcttcttatcagattgaagtcagaacacgaacatcttttccgtaacattcaa
agaaacgaatatcataacctgtttgattttatcagctcaaagggtctgaaaatcatgaac
ttgggaggcggtgttcaagctgcagatggtgttgcggctgttctaagggatgaggaagat
gatgcggttgaccctcatcttgaacgaatcaagaatgaagctggtgaagaagagagtgac
gaggaggatgaagattttgtggctgaaaaagatgattcgggctcacctactgatgattct
gggggagatgactcagatggtagtgacagtggaggtgaaaaggagcagcagagaattcct
aagaaagaatcaaagaaagaagctagtggttcgaaaacagcagcagcatcttcaagtaag
aagaaaagcaaaggtggggccggggatgaagatggtgcaaagaaaaagaaacaaaagaag
aaaaaggatccaaatgcaccgaaaagagcaatgagtggtttcatgttcttctcgcagctt
gaacgagagaatctgaagaaggatattccgggaatcggatttaaggaaattgggagggaa
cttggagagcgatggaataagttgacagcagaagagaaggcaccgtatgaagcaagagca
gtggcagataggaaaaggtatcaaaatgaaaaaaccggatacaagaatgcgcaacctgct
cccatggatttggtagatgaatcagacagcaattag
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