Lactuca sativa (garden lettuce): 122196513
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Entry
122196513 CDS
T05352
Name
(RefSeq) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122196513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
122196513
03400 DNA repair and recombination proteins [BR:
lsv03400
]
122196513
Enzymes [BR:
lsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122196513
Transcription machinery [BR:
lsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
122196513
DNA repair and recombination proteins [BR:
lsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
122196513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribosomal_S11
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-GeneID:
122196513
NCBI-ProteinID:
XP_052623968
LinkDB
All DBs
Position
Unknown
AA seq
466 aa
AA seq
DB search
MAKAIPKKGSRGRIGSRKSTRKIPKGVIHIQASFNNTIVTVTDVRGRVVSWSSAGTSGFR
GTKRGTPFAAQTAAGHAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDV
TPMPHNGCRPPKKRQKITVSTRTLQWKCVESAADSKRLLYGRFILSPLMKGQADTIGIAM
RRALLGEIEGTCITRAKSEKISHEYSTIMGIQESVHEILMNLKEIVLRSNLYGTCEASIC
VRGPGYVTAQDIILPPYVEILDNTQHIASLTEPIELVIGLQIEKNRGYLIKAPNTFQDGS
YPIDPVFMPVRNANHSIHSYENGNKEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLH
TKEENLNLEGNQHMVPLPPFTFYDKLAKLTKNKKKMALKSIFIDQSELPPRIYNCLKRSN
IYTLLDLLNNSQEDLMKMEHFRIEDVKQILGILEKNFVIDLPKNKF
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagctataccgaaaaaaggttcacgtggacgtattggttcacgtaagagtaca
cgtaaaataccaaagggggttattcatattcaagcaagtttcaataataccattgtgact
gttacagatgtacgggggcgagtggtttcttggtcctctgccggtacttctggcttccga
ggtacaaaaagagggacgccatttgctgctcaaaccgcagcaggacatgctattcgtgca
gtagtagatcaaggtatgcaacgagcagaagtcatgattaaaggtcccggtctcggaaga
gacgcagcattacgagctattcgcagaagtggtatactattaactttcgtacgggatgta
acccctatgccacataatggctgtagacccccgaaaaaaagacagaaaataacagtatct
actcggacactacagtggaagtgtgttgaatcagcagcagacagtaagcgtcttctttat
gggcgctttattctgtctccgcttatgaaaggtcaagcagacacaataggcattgctatg
cgaagagctttgcttggagaaatcgaaggaacatgtatcacacgcgcaaaatctgagaaa
atatcacacgaatattctaccataatgggtattcaagaatcagtacatgaaattttaatg
aatttaaaagaaatcgtattgagaagtaatctctatggaacttgtgaggcgtctatttgt
gtcaggggccccggatatgtaactgctcaagatatcatcttaccgccttatgtagaaatc
ctcgataatacacagcatatagctagcttgacggaacccattgagttggttattggatta
cagatagagaagaatcgcggatatcttataaaagcgccaaatacctttcaagatggaagt
tatcctatagatcctgtattcatgcctgttcgaaatgcgaatcatagtattcattcttat
gaaaatggtaacaaagagatactatttctcgaaatatggacaaatggaagtttaactcct
aaagaagcactttatgaagcctcccggaatttgattgatttattgattccctttttacat
accaaagaagaaaatttaaatttagagggcaatcaacacatggttcctttaccccctttt
accttttatgataaattggctaaactaacaaaaaataaaaaaaaaatggcgttgaaatcg
atttttattgaccaatcagaattgcctcccaggatctataattgcctcaaaaggtccaat
atatatacattgttggaccttttgaataacagtcaagaagatcttatgaaaatggaacat
tttcgcatagaagatgtcaaacaaattttaggcattctagaaaaaaatttcgtaattgat
ttaccgaaaaataagttttaa
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