Ligilactobacillus saerimneri: GTO87_01335
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Entry
GTO87_01335 CDS
T08336
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lsw
Ligilactobacillus saerimneri
Pathway
lsw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GTO87_01335
09124 Replication and repair
03420 Nucleotide excision repair
GTO87_01335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsw03021
]
GTO87_01335
03036 Chromosome and associated proteins [BR:
lsw03036
]
GTO87_01335
03400 DNA repair and recombination proteins [BR:
lsw03400
]
GTO87_01335
Enzymes [BR:
lsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GTO87_01335
Transcription machinery [BR:
lsw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GTO87_01335
Chromosome and associated proteins [BR:
lsw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
GTO87_01335
DNA repair and recombination proteins [BR:
lsw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GTO87_01335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
QLL77386
UniProt:
A0A7H9EIA0
LinkDB
All DBs
Position
complement(285523..287904)
Genome browser
AA seq
793 aa
AA seq
DB search
MDINIKEKIGIRELVEFVLKGGDLVTTSSNDYSAQEGTRIHHLLQKKWPATIAAEVDLKG
KFTHADHTIQVHGRADGVRYADHLPSEILEIKTSPVAFKDLTTNTLELYWSQAKFYAHLL
LTKYDLPQLKITLIYYQTTTKQITEKSVTVSRDQVKVFTKNIIASYATWLDLVADLHRQR
DQAITQLEFPFSSYHQNQHELAAAVYRTIASQKKLLVEAPTGTGKTISTLFPAIKALGAG
LCTRIFYLTAKRSTRMVARDTIKLLHEHRLNLHTVVLTAKDQIIFKEERDLADEDNPFLL
GYYDRIRPALLDILQHEQLIDPETIWTYARKHTVDPFEYSLDISLFCDVVICDYNYLFDP
LVYLQRFFTQPDPHYVFLVDEAHNLIDRSRQMYTKEISSAALVPLLSQLKDQPRRRQRLI
HLLERVLDSFDALKITLQKYHQETLMMTEAATDFNKRLDTFCEFTSDWLKEHQQDELYDE
IKDYFLTAHAFLKINDYYGPTFRTRLLVVNDELTIRTICLDSSHLLADSLNLGGGTVLFS
ATLSPLPYYREMFGLDDDTNQGLLYQLPSPFASDHLGLFVTNDIQTTYQKRPASLGQVSA
TIYQLLASHPGNYLIFLPSYSYLEQVVARFNRDYPEIATVCQTGTMDNEARTNFLANFVA
NPTSSLVGFAVLGGMFAEGIDLQGSRLAGVAIVSVGLPRINPETDELRKYFTAHHRDGFQ
YAYQLPGLNNVFQAAGRVIRGEDDVGVVVLIDQRFASPRYTQFYPPHWQHFQLTNSPQQL
QLALKKFWHQHTD
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggatattaacattaaagaaaaaattgggattcgcgagcttgtcgaatttgtcctcaag
ggtggcgatttggtaactactagctccaacgattattctgctcaggaaggaacccgaatt
caccatcttttacaaaagaagtggcctgctacaatcgctgccgaagtggacctcaagggc
aaatttacccatgctgaccatactattcaggttcacgggcgagctgacggtgtgcgctat
gctgaccaccttcccagtgaaattttggaaattaaaacttcgccagtcgcttttaaagat
ctcactactaacaccttagagttgtattggtcacaggctaaattctatgcccatcttttg
ctgaccaaatatgacttgccccagttgaaaataactttaatttactatcagacaacaact
aaacagataacagaaaaatccgttactgtcagccgtgatcaagttaaggtctttaccaag
aatatcattgccagttatgcaacctggctcgatcttgtcgctgatctccaccgccaacgg
gatcaggctatcactcaacttgaatttcctttttcaagttatcaccaaaatcaacacgaa
ctggccgcagccgtttaccgcactatcgctagccaaaaaaagctccttgttgaagcccca
acagggacaggcaagactatctccacactttttcctgccattaaagctttaggtgctggc
ctgtgcacacgtattttctacctaactgcgaaacgttctacccgcatggtcgcccgcgat
accatcaagcttctccatgagcacagactcaacctccacacggtagtcttgacggctaaa
gatcaaatcatcttcaaagaggaaagggacctagccgatgaggataatcctttcttatta
ggctattatgatcggattcgaccggcactgctggacatcttacagcatgagcagctgatc
gacccggaaacaatttggacttatgctcgcaagcatactgttgatccgtttgaatactca
ctcgatatcagtcttttttgtgacgtggtaatttgtgattacaactacctctttgatccg
ctggtctatctccaacgtttcttcacccagcctgacccacattatgtctttctcgttgat
gaagcacataatctaattgaccgctcacgtcagatgtacaccaaggaaattagttctgct
gcgctggttccccttctaagccagctcaaggaccaaccccgacgtcgccaacgcttaatt
catttactggaacgggtattagatagttttgatgctttgaagatcactctccaaaagtat
caccaggagaccctgatgatgactgaagcagccactgattttaacaagcgcttagatact
ttttgcgagtttactagtgattggctcaaggagcatcagcaggatgaattatacgacgag
ataaaggactattttctgacagctcacgcctttttaaagatcaatgattactatggacca
acatttcgcacccgcctgctcgttgtaaatgatgagctcactattcggactatctgtcta
gattccagtcatttgctagctgattccctcaatctcgggggcgggactgtccttttttcg
gcaacactttcgcccttgccgtactatcgggaaatgttcggcctggatgatgatacgaac
caaggattactgtaccagctaccttcacctttcgcatcggaccacctgggattgtttgta
accaatgatatccaaactacctaccaaaaacgtccagctagtttgggacaagtcagtgca
acgatctatcagcttcttgctagccatccaggtaattatctgatcttcttaccatcatat
tcttatcttgagcaagtagtagcccgttttaatcgtgactatcctgaaattgcaacagtc
tgtcaaaccgggaccatggacaacgaagcacgcactaattttttagctaacttcgttgcc
aatccaacttcatccctagtcggctttgccgttttgggagggatgtttgctgagggaatt
gaccttcaaggatcccgtttggccggggtggcaatcgtcagtgtagggctcccccgaatc
aaccccgaaacagatgagctacgtaagtattttactgcccatcatcgcgatggtttccaa
tatgcttaccagctaccgggattaaataatgttttccaggctgctggtcgtgtcattcgg
ggtgaagacgatgttggagtggtcgtcctaattgaccaacgttttgcaagcccgcgctac
acccagttttatccgcctcactggcaacatttccagctgacaaactctcctcagcaactg
cagctggccttgaaaaaattttggcaccaacatactgattaa
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