Ligilactobacillus saerimneri: GTO87_05205
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Entry
GTO87_05205 CDS
T08336
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lsw
Ligilactobacillus saerimneri
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsw03019
]
GTO87_05205
03009 Ribosome biogenesis [BR:
lsw03009
]
GTO87_05205
Enzymes [BR:
lsw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GTO87_05205
Messenger RNA biogenesis [BR:
lsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GTO87_05205
Ribosome biogenesis [BR:
lsw03009
]
Prokaryotic type
rRNA helicases
GTO87_05205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Ferritin
Motif
Other DBs
NCBI-ProteinID:
QLL78052
UniProt:
A0A7H9ELA5
LinkDB
All DBs
Position
complement(1013751..1015079)
Genome browser
AA seq
442 aa
AA seq
DB search
MKFTDFEFKPFINDALAEIGFTEPTEVQERLIPMILDGRSVVGQSQTGSGKTHAFLLPIM
QNVTADDYVQAVITTPSRELAYQIYKAAKQIVQHADQTIQVVNYVGGTDKHRQVEKLQHH
QPQIVIGTPGRILDLIRTNALDIHKAHYFVVDEADMTLDMGFLAPVDAIASTMPQDLQML
VFSATIPVKLQPFLRKYMNNPVVEVVETKTVISPTIENILISTQGKDRNRLIYQLLTMGE
PFLALVFANTIKRVDELTAYLRAQGLKVAKIHGDIQPRQRKRIMREVQQLDYQFVVATDL
AARGIDIEGVSLVINDDIPEDLEFFIHRVGRTGRNGMAGTAITLYGPGEDQMIVELEKMG
IHFKPQMLRNHELVDSYDRNRRDKRRVRQQKLDPRLVGMVKKEKKKRKPGYKRKIKQAIQ
KDRQQKKKLEKRQVRRQQRRRG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagattttgaatttaaaccatttattaacgacgcactagcagagattggc
tttacagaaccaacggaagtacaggaacgtttgattccgatgattctagatggacgcagt
gtggttgggcagtcacagactggtagtgggaaaacccatgccttcttgctacctatcatg
cagaatgtgaccgctgatgactatgtgcaagctgtaattacaacccctagtcgggaatta
gcttatcagatttataaagctgctaaacagattgttcagcatgcggatcagacgattcag
gtagttaactatgttgggggaacagacaagcaccgccaagtagaaaaattacagcaccac
caaccacaaattgttatcggaacgccaggacggattcttgatttgatcaggactaatgcc
cttgatattcataaagcacattattttgtagttgatgaagctgatatgacgcttgatatg
ggctttttagcccccgtagatgcgattgcgtccacaatgccacaggacttacagatgttg
gtcttttcggctaccattccggtcaaattacagccgtttttgcgtaagtatatgaataat
ccagtagtggaagtagtagaaaccaagacagtaattagtcctactattgaaaatattttg
atttcgacccaggggaaagaccgtaaccggctgatttatcaactgttgacgatgggagaa
ccattcttggcgttggtttttgccaacacgattaagcgggttgatgaattaaccgcgtat
ttacgggcacaaggattgaaagtggctaaaatccatggggacattcaaccccggcaacgg
aaacgaatcatgcgtgaagtgcagcaattagactatcagtttgtcgttgcaacggacctg
gcagcccggggaatcgatatcgaaggtgtttcgctggtaatcaatgatgacatcccagaa
gatttggaattcttcatccaccgggttggtcggacagggcgcaatggaatggccgggacg
gcaattactttatatggtccgggtgaagaccagatgattgttgaactagaaaagatgggg
atccacttcaagccgcagatgttgcggaaccatgagttggtggattcatatgatcgtaac
cgtcgggataagcgtcgtgtaagacaacaaaaactagatccacgtctggtcggaatggtt
aaaaaagaaaagaaaaagcgcaaaccaggctataagcgcaagattaaacaagctatccaa
aaagaccgccaacaaaagaaaaagttagaaaagcggcaggtacggcgccaacaacggcgg
cggggttaa
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