Ligilactobacillus saerimneri: GTO87_05225
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Entry
GTO87_05225 CDS
T08336
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsw
Ligilactobacillus saerimneri
Pathway
lsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTO87_05225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsw03019
]
GTO87_05225
Messenger RNA biogenesis [BR:
lsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GTO87_05225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
P8
Motif
Other DBs
NCBI-ProteinID:
QLL78056
UniProt:
A0A7H9EK72
LinkDB
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Position
complement(1018157..1020022)
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AA seq
621 aa
AA seq
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MSSVKIIPFGGVRENAKNMYAVEINDEIFILDCGLKYPENELLGIDIVIPDFEYLRTRKK
DIAGVFLTHGHADAIGALPYFVSEFDVPVFGSELTIELAKIACESESKAKQFNDFHVVTE
KTEIDFKHATVSFFKTTHSIPESLGIVLGTDEGSIVYTGDFKFDQTAAAGYQTDFARLAQ
IGQSGVLALMSDSANAENTDNRQQVADEYEIADLISSNFEYQAGRIIVACKASNILRVQQ
VLNAAAENERKVFLTGRDLEKIVQTAIRLDKLHLPEDDLLVPISEIGNYKDDQIVVLEAG
RSGEPLKSLQKMALRRHKNIELHKGDLVYITTTPSHAMETMVAKTRDMIYRAGAEVKAIS
DEINSSGHASRNDLQLLMNLLQPRYVVPVQGEYRLLAANAEWAKELGIAPKDIFILSKGD
VLEYQKGKMLVAEKITVGNTMIDGIGVGDIGNIVLHDRKLLSEDGIFIAVVTIDQRKRKI
IDSPKITSRGFVYVKNSRDLMNESAEIVRKSVQQNLDNKEFDWSQLKQDVRDKLNHFLYE
QTGRHPVILPVIMEVNQYNHRRNKGQSNKKDNTNSGAAKGKGTKKRPKKRESNNKAAGSK
KKQAHRARRKKPASAGENKKN
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagttaagattattcctttcggcggggtacgtgaaaatgcgaaaaacatgtac
gctgttgaaattaatgatgaaatcttcatcttagactgtggactcaagtatccagaaaac
gaattacttggtattgatattgtgattccagattttgaatatctgcggacacgcaaaaaa
gatattgcgggggtctttttaacccacggccatgctgatgcaattggggctttgccatat
tttgtcagcgaatttgatgtgccggtttttggatcggaactaaccatcgaattagccaag
attgcttgtgaaagtgaaagcaaggctaagcaattcaacgatttccatgtggtgacggag
aagacagagatcgattttaagcatgcaacggtgtcattcttcaagacgacccactcaatt
cctgaatcattagggattgtcttgggcacggatgaaggaagcattgtatatactggtgat
tttaagtttgatcaaacggcagctgccggatatcaaacagattttgctcgcttagcccag
attgggcaaagtggagtgttggctttgatgtcagattcagccaacgcagaaaatactgac
aaccggcaacaagttgctgatgaatatgaaattgctgacctgatcagttctaacttcgaa
taccaagctgggcggattattgtagcatgcaaagcttctaatatcttgcgggttcagcag
gttttgaatgcggcagcggaaaatgaacggaaagtctttttgacaggtcgcgacctcgaa
aagattgtgcaaacagccatcagattagacaaactccacttgccagaagatgatttgcta
gtaccaatttccgaaattggtaactacaaagatgaccaaattgtagttcttgaagcgggg
cggtcaggcgaaccattaaagtcactacaaaagatggcattgcggcggcacaaaaatatc
gaattgcacaagggtgacttggtatacatcacgacgaccccatcacatgcaatggaaaca
atggtggccaagacccgcgatatgatttatcgcgctggcgcagaagttaaggcaatttcg
gacgaaatcaactcatccgggcatgctagtcgtaacgacttgcaattgttaatgaactta
ttgcaaccacggtatgtagtcccagtgcaaggtgaataccggctattggctgctaatgcc
gaatgggctaaggaattaggaattgcgccgaaggatattttcattcttagcaagggtgat
gtcttagaatatcaaaagggtaagatgcttgtggccgaaaagatcacggttggcaatacg
atgattgatggtattggtgtgggtgatattggtaatatcgttctacatgatcggaaactg
ttgtctgaggatggtattttcatcgcagtggtgacgattgaccagcgaaagcgaaaaatt
attgattcaccaaagatcacttcgcgcggttttgtatatgtcaagaatagccgtgacttg
atgaatgaaagtgctgagattgtccgtaagtcagtccaacaaaatcttgataataaagaa
tttgactggagccagttgaagcaagatgttagagataaattgaatcacttcttgtatgag
caaactggacgccatcctgttatcttgccggtaattatggaagttaaccaatataaccac
cggcggaacaaaggccagtccaataagaaagacaatactaattcaggcgctgcaaaaggc
aaggggaccaagaagcggcctaaaaagcgtgaaagcaacaataaagccgctggatctaag
aaaaaacaagcacatcgcgctcggcggaagaagccggcttcagcaggagaaaataaaaag
aactaa
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