Ligilactobacillus saerimneri: GTO87_05325
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Entry
GTO87_05325 CDS
T08336
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsw
Ligilactobacillus saerimneri
Pathway
lsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTO87_05325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsw03019
]
GTO87_05325
Messenger RNA biogenesis [BR:
lsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GTO87_05325
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QLL78073
UniProt:
A0A7H9EK26
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Position
1038862..1040538
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AA seq
558 aa
AA seq
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MKKLKVKNNETAVFAVGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYQ
YLVANRDKIKALVITHGHEDHIGGIPYLLQQVNVPIYAGPLALALIKSKLEEHGLLRSTK
LHEIDEDTVLKFRKTSVSFFRTTHSIPDTLGVAVKTPSGTIVETGDFKFDLTPITHQAPN
FQKMARLGEEGVLCLLSDSTNAEVPNFTKSEQWVGKSIHRIFEKVDGRIIFATFASNISR
VQQAVSAALGKGRKIAVFGRSMEAAIENGRRLGYLDIPDKALISAKELNSLPANKVMILC
TGSQGEPMAALSRIANGTHRQVSIHPGDTVVFSSLPIPGNTLSVNKVINELEEAGANVIH
GRINNIHASGHGGQEEQRLMLRLIKPKYFMPIHGEYRMLKIHTELAEQCGVPEENSFILK
NGDVLALTKDSARYAGHFNADDVYVDGSGVGDIGNIVLKDRRILSEEGLVVVVATIDMKK
RRILAGPDLLSRGFIYMRESGELINQARKQLFRSITRSLKGDKVTEAKIRENIIADLQSF
LFDQTERHPMILPMLITV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttaaaggttaagaataacgaaaccgccgtgtttgctgttggggggttaggc
gaaatcgggaagaatacctatggtgttcagttccaagatgaaatcatcctgattgatgct
ggaatcaagttccctgaagatgacctgcttgggatcgactatgtcattcctgattaccaa
tatttagtggctaaccgtgacaagatcaaggcgctggttatcacccacgggcacgaagac
cacattggtggtattccctacctccttcaacaagttaacgttcctatttatgctggtccg
cttgcattagctcttatcaagagcaaattagaagaacatggattgctcagatcaactaaa
ttacacgaaattgatgaagatactgttttgaagttccgcaaaacaagtgtttctttcttc
agaacaacacactcaatccccgataccttaggggtagctgttaagaccccttctgggacg
attgttgaaacaggggacttcaagttcgacctgacaccgatcacccaccaagcaccaaac
ttccaaaagatggcgcgcttaggtgaagaaggtgttttgtgtctcctctctgacagtacc
aatgctgaagtacctaacttcactaagtcagaacaatgggtgggtaagtcaatccaccga
atttttgaaaaagttgacggaagaattatttttgcaacattcgcttctaatatctcccgg
gtccaacaagctgtttctgctgccctaggcaagggacgcaagattgccgtctttggtcgg
agcatggaagccgccatcgaaaacgggcgccgtttaggttacttggacattcctgataaa
gctttgatttctgccaaggaactcaatagcctccctgctaataaggtgatgatcttatgt
acagggtcccaaggtgaaccaatggccgcccttagtcggattgccaacggtactcaccgg
caagtttccattcaccccggggatacggttgtcttctctagtctccctattcccggtaat
actttaagtgttaacaaggtgatcaatgaactagaagaagctggggctaatgttatccat
gggcggatcaacaacatccacgcttctggtcacggtggtcaagaagaacaacggttaatg
ttacggttgatcaaacccaaatacttcatgccaatccacggtgaataccggatgctcaag
atccacaccgaactggctgaacaatgtggggtccctgaagaaaactccttcatcctgaaa
aacggtgatgttctcgccctcactaaggatagtgcccgctatgctggtcatttcaatgcc
gatgatgtctatgttgatggctcaggtgttggtgatattggtaatatcgtcctcaaggac
cggcggatcttatccgaagaagggttggtggtagttgttgcaaccatcgacatgaagaag
cggcgcattttagctggtccagacttattgtcacggggcttcatctatatgcgtgaatct
ggtgaactgatcaaccaagcccggaagcaactcttccggtcgattacccggtcactcaag
ggtgacaaggtaactgaagctaagatcagagaaaatatcattgctgacttacaatcgttc
ctgtttgaccaaacagaacgccacccaatgattttgccaatgctgattactgtctaa
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