Ligilactobacillus saerimneri: GTO87_07305
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Entry
GTO87_07305 CDS
T08336
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lsw
Ligilactobacillus saerimneri
Pathway
lsw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GTO87_07305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsw03021
]
GTO87_07305
03400 DNA repair and recombination proteins [BR:
lsw03400
]
GTO87_07305
Enzymes [BR:
lsw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GTO87_07305
Transcription machinery [BR:
lsw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GTO87_07305
DNA repair and recombination proteins [BR:
lsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GTO87_07305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QLL78411
UniProt:
A0A7H9ELP8
LinkDB
All DBs
Position
complement(1407218..1410802)
Genome browser
AA seq
1194 aa
AA seq
DB search
MNNLAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQTDSYNWFLDEGLREMFNDIMPIED
FQGNLSLEFVDYRLLEPKYTVEEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFP
LMTKQGTFIINGAERVIVSQLVRSPGVYFNSEVDKNGRTTFGTTVIPNRGAWLEYETDAK
DISYVRIDRTRKLPMSELVRALGYGSDSEIINMLGDSESLMLTLEKDVHKDTNDSRVEES
LKDIYERLRPGEPKTAESARNLLTARFFDPKRYDLAPVGRYKINKKLDLKTRLLNTTLAE
TLADPDTGEIIAREGDVITKQVMDKLAPYLKRDDFKTVTFTPSEEGVVQEPMTLQIIKVL
SPVDPDRVINVIGNGNIDLKFKHITPADIIASMNYFLNLQENLGSTDDIDHLGNRRIRSV
GELLQNQFRIGLSRMERVVRERMSIQDTSTITPQQLINIRPVVASVKEFFGSSQLSQFMD
QTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLS
SYARVNKYGFIETPYRRVSWTTHKVTDKIDYLTADEEDNYIIAQANSPLNDDGSFVDDEV
MARHKDDDVEISIEKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIH
PHAPLVGTGIEYKAAHDSGVALLSKYAGTVEYVDAREIRVRRDDGSLDKYKLMKFRRSNG
GKNYNQTPIVRVGEKVEADEVLADGPAMEEGELALGQNPLIAFMTWDGYNFEDAIAINER
LVKEDVYTSIHIESYESEARDTKLGPEEMTREIPNVGEDALKDLDEFGIIRVGAEVQDGD
ILVGKVTPKGMTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKVFTRENGDE
LAPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVIPEEDMPFMPDGTPIDIMLSPM
GVPSRMNIGQVLELHLGFAARKLGIHIATPVFDGATDDDIWDALKEAGLPSDGKSVLYDG
RTGEPFDNRIAVGVMYYLKLAHMVDDKIHSRSIGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDVVGRVQTYEAIVKGEPIPKPGVPESFRVLVKELQALGL
DMKVLDADKNDIDLREMESDDDEVINVDALSKVAKEEADKRAAKEKAQEEQSEK
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaacttggcaggacatttagtaaaatacggcaagcaccgtactcggagaagttat
gcgcggattaaagaagtacttgatctgcctaacttgatcgagattcaaactgattcctat
aactggttcttggatgaaggattacgtgaaatgttcaacgacattatgccgattgaagat
ttccaaggcaatctttctttagaattcgttgattaccggttacttgaaccaaagtatacg
gttgaagaagcacgggaacacgatgcaaactattctgctccattacatgttactttaaga
cttactaaccatgaaactggggaaatcaagtcccaagatgtattctttggtgatttccca
ttgatgacaaaacaaggaactttcattatcaacggtgctgaacgtgttattgtttcccaa
ttggttcgttcgccaggtgtctactttaattcagaagttgacaagaatggacggacaaca
tttggaacaacagttatccctaaccgtggggcatggctggaatacgaaacagatgccaag
gatatttcctatgttcggattgatcgaacacgtaagttgccaatgtctgaattagttcgg
gctttgggttatggctccgatagtgaaatcatcaatatgcttggtgatagtgaaagcctg
atgcttactttggaaaaggatgttcataaggatactaatgattcacgggttgaagaatca
ttaaaggatatttacgaacggttacgtcctggtgaaccaaagactgctgaatctgctcgt
aacttgttaacagctcgtttctttgatccaaagcgttatgatttggcgccagtgggacgt
tataagatcaataagaagttagatcttaagacgcgcttgttgaacacaacattagctgaa
acgttggctgatcctgatactggtgaaatcattgctcgtgaaggcgatgtaatcactaag
caagtgatggataagttagcaccatatttaaagcgtgatgactttaagacagttaccttt
acaccttctgaagaaggtgttgttcaagaaccaatgactttacaaatcattaaggttcta
tcaccagtggatcctgaccgtgtaattaatgtaatcggtaatggaaacattgatcttaag
tttaaacacattaccccagctgatatcattgcatcaatgaactatttcttgaatttacaa
gaaaacttaggttcaactgatgatattgaccacttggggaaccgtcggattcgctctgtg
ggtgaattattgcaaaaccaattccgaattggtttatcacggatggaacgggttgtacgg
gaacggatgtcaatccaagatacatctacaattacgccacaacagttaatcaatattcgt
ccggttgtagcttctgtgaaggaattctttggttcttcacagttatcacagttcatggat
caaactaacccattgggtgaattgacacataagcgccgtctatcagccttaggtcctggc
ggtttgactcgtgatcgtgcgggttatgaagtgcgggacgtgcactatacgcattatggt
cggatgtgtccaattgaaacacctgaaggtcctaacatcggtttgattaacagtttgtct
tcctatgcacgggttaacaagtatggattcattgaaaccccataccggcgtgtttcttgg
acaactcataaagttactgataagattgactacttaactgccgatgaagaagataactat
atcattgctcaggctaactctccgttaaatgatgatggttcattcgttgatgatgaagtt
atggcacgtcataaagatgatgacgttgaaatttcaattgaaaaagttgactacatggac
gtttctcctaagcaagtagttgcggttgccacagcatgtattccattcttggaaaacgat
gactccaaccgtgccttgatgggggctaacatgcagcggcaagctgttccgttgattcat
ccacatgcaccacttgttggtacagggattgaatacaaggcagcccatgactctggggta
gcattgttatccaagtatgcagggactgttgaatatgtagatgcacgagaaatccgtgtt
cggcgtgacgatggctcacttgacaagtacaagctgatgaagttccgtcgttctaatggt
ggtaagaactataaccaaacaccgattgttcgtgtgggtgaaaaagttgaagctgacgaa
gttcttgcagatggcccagcaatggaagaaggggaattagccctagggcaaaacccattg
atcgcctttatgacttgggacggatacaacttcgaagatgccatcgcaatcaatgaacga
ttagttaaggaagatgtttatacgtccatccatatcgaatcatacgaatctgaagcacgt
gacactaagttaggacctgaagaaatgacacgggaaattcctaatgttggtgaagatgca
ctgaaggatttggatgaattcgggattatccgggttggtgccgaagtacaagatggcgat
atcttagttggtaaagttacaccaaagggtatgacagaattatccgctgaagaacgactc
ttacacgcaatctttggtgaaaaggcacgcgaagtacgggatacttccctccgtgttcca
cacggtggtggcggtattattcaagatgttaaggtcttcacccgtgaaaatggtgatgaa
ttggcacctggtgtcaacatgatggttcgtgtctacattgctcaaaagcgtaagatccaa
gttggggataagatggctggtcgtcacggtaacaaagggactgtttccattgttattcca
gaagaagatatgccatttatgccagatggtacgccaattgacatcatgctttctccaatg
ggtgtgccttcccgtatgaacattgggcaggtgttggaactccacttaggctttgctgca
cgtaaattaggaattcacattgcaacgcctgtttttgacggtgctaccgatgatgacatc
tgggatgcacttaaagaagccggcttgccatctgatggtaagtctgtgttgtatgatggt
cggacgggtgaaccatttgataatcggattgccgttggtgttatgtactacctgaagttg
gcacacatggtcgatgataagattcactcacgttcaattggaccatactccttggttaca
caacaaccacttggtggtaaggcacaatttggtggtcagcgtttcggggaaatggaagtt
tgggcccttgaagcatatggggcagcatatactctccaagaaatcttgacttacaagtca
gatgatgttgtgggtcgtgttcaaacttacgaagccatcgtcaagggtgaaccaattcct
aaaccaggtgtacctgaatccttccgcgtgcttgtaaaagaattacaagctttaggattg
gatatgaaggttcttgatgctgataagaacgacattgacctccgtgaaatggaaagcgac
gatgatgaagtaattaacgtcgatgcattgagcaaggttgccaaagaagaagcggacaaa
cgagctgctaaagaaaaggcacaagaagaacagtctgaaaagtaa
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integrated database retrieval system
