Lysobacter soyae: H8L67_01130
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Entry
H8L67_01130 CDS
T10230
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lsy Lysobacter soyae
Brite
KEGG Orthology (KO) [BR:
lsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsy03019
]
H8L67_01130 (hrpB)
Enzymes [BR:
lsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H8L67_01130 (hrpB)
Messenger RNA biogenesis [BR:
lsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H8L67_01130 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
AAA_30
Flavi_DEAD
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QYR53157
LinkDB
All DBs
Position
complement(222984..225485)
Genome browser
AA seq
833 aa
AA seq
DB search
MPHIDPTLPIADVMPDILASLGSHTRLVLEAPPGAGKTTQVPLALLDAAWLEGRQIVMLE
PRRVAARAAASFMAKQLGEAPGDRVGYQIRFERKVSASTRILVVTEGLLARMIQEDPMLE
SVGAIVFDEFHERHLSADLGLALALDVQSGLREDLRIVLMSATLDGEALSTWLDAPRVSS
AGRAYPVEIRHVDAQREEKLSQHIRRALADATANMAGDALVFLPGKRDIALTQAVLEQAM
PEVDIRALHGDLPVEEQAALLSPSAHARRVVLATNVAESSVTLPGVRIVVDSGLAREPAF
NSDTGFTHLETRRISQASADQRAGRAGRVAEGLALRLWPASQRLQSQRTPEILQADLAPL
RLELAAWGSDDLRFVTAPPTAAMQNASALLRDLGALDRDQSLTARGRRLLELGLHPRMGA
MVLSAQTPTERALACDLIALADARSPLLRPGDAFAERWQALAAFRARGFVDGAHAGALRA
LDRAAMQWRKRLRVDAGAPNVLPAHALGALLAQAYPDRIARASANDPYRYQLANGQTAKL
SEYTQLLGEPWLVINELHYARPDARILSAAPVDEAYLREAFSAQFQEGDEVEWDEARAAL
VAARIKRFDRIVLSRAPGGQVDAERAQAALVDAVRRLGLAVLPWSDASRQWQARVQLLRK
HLPALALPAMDDDSLVADLDDWLAPAFAGKTRLSALDTQALSNALRTRLDWSQQQALDMH
APKQMQVPSGLSRDIHYALDHEGEPEAPVLAVKLQELFGLGDTPTIADGRVSLTLHLLSP
GGRPLQVTRDLRGFWDRTYPEVKKEMKGRYPKHPWPDDPWSATATHRAKPRGT
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacatcgatccgacattgccgatcgcagatgtgatgccggacatcttggcgtct
ttgggaagccatacacgcttggtgctggaggcgccccccggcgcaggcaaaaccacacag
gtgccgctggccctattggatgcggcgtggcttgagggccggcaaattgtgatgctggag
ccaagacgcgtcgccgcacgtgcggcggcaagcttcatggcgaagcaattgggtgaggcg
ccgggcgatcgcgtcggctaccagatccgcttcgagcgtaaagtctctgcgagcacgcgc
attttggtcgtgaccgaaggcctgctggcacgcatgatccaagaagaccccatgcttgaa
agtgtgggtgcgattgtgttcgacgaatttcacgagcgccacctcagcgccgatttggga
ttggccttggccttggatgtgcaatcgggcttgcgtgaggatctgcgcattgtgttgatg
tcggcgacgctggacggggaagcactttccacgtggttggacgcaccgcgcgtcagcagc
gcggggcgcgcctatccggtcgagatccgccatgtcgacgcccagcgcgaggaaaagctg
tcacagcacatccgacgcgcgctcgccgacgccacggcgaacatggcaggcgacgccttg
gtgtttctgccgggcaagcgcgatatcgccttgacccaagcggtgcttgagcaggccatg
ccggaggtcgatattcgtgcgctgcacggcgacctcccggtagaagaacaagcggcgttg
ctatcgccgtccgcacacgcgcgtcgcgtcgtactcgccaccaatgtcgcggaatcgagc
gtcaccttgcccggcgtgcgtatcgtcgtcgattccggcctcgcacgcgaacccgcattc
aacagcgacaccggcttcacccatctggaaacgcgacgaatttcgcaagcctcggccgac
caacgcgccggccgcgcgggccgcgttgccgaaggactggcactgcgcctttggccggca
tcgcagcgcctgcagtcacaacgcacaccggaaatcctgcaggcggatcttgcaccgctg
cgtcttgagcttgccgcctggggcagtgacgatttgcgttttgtgaccgcaccgcccacg
gccgcgatgcagaacgcctcggccttgctgcgcgaccttggcgccttggatcgagatcag
agcttgactgcccgcggccgtcgcctgctcgagctcggactgcatccacgcatgggtgcg
atggtgttatccgcacaaacccccaccgagcgcgccctcgcctgcgatctgatcgccttg
gccgatgcgcgctcacccctgctgcgtccgggtgatgctttcgcagaacgctggcaagca
ctggcggcatttcgcgcaagaggatttgtggacggcgcacacgccggcgccttgcgcgcg
ttggatcgtgccgcgatgcaatggcgtaaacgattgcgcgtcgatgcaggggcgcccaac
gtattgcctgcgcatgccttgggggcattgctcgcgcaggcctatcccgaccgtattgcg
cgtgcgagtgcgaacgatccgtatcgctaccaattggccaacggacaaaccgccaagttg
tctgagtacacgcagttgcttggcgagccttggctcgtcatcaatgaactgcattacgcc
cgacccgatgcacgcatcctgtcggcggcgccggtggatgaagcctatttgcgcgaggcc
ttctccgcacaattccaggaaggggatgaagtggagtgggacgaagcgcgtgccgccttg
gtggccgcacggatcaaacgcttcgatcgcatcgtgctgtcgcgtgcgcctggcggccaa
gtagatgccgagcgcgcgcaggctgccttggtggatgcggtccgccgactgggtctcgcg
gtgcttccatggtctgatgccagccggcagtggcaggcgagagttcaactgctgcgcaag
catttgccggcattggccttgcccgcgatggatgacgacagtctcgtcgccgacttggat
gattggctcgcgcccgcgttcgccggaaagacgcgattgtcagccttggatacgcaggcg
ctgtcgaatgccttgcgaacacgcttggattggtcgcaacaacaggcgctcgacatgcat
gcgccgaagcaaatgcaagtgccctcgggactgtcacgcgatatccattacgcgctcgat
cacgagggtgaacccgaagcaccggtgctggcggtgaagttgcaagagttgttcggcctt
ggtgataccccgacgattgccgacggccgtgtcagcttgaccttgcatttgctctcgccc
ggcggtcggccgctacaggtgacgcgcgacttgcgcggtttctgggatcgcacctatccg
gaagtgaaaaaagagatgaagggccgctatcccaagcacccctggccggatgacccatgg
tccgcaaccgcgacgcacagggccaaaccgcgcggaacttga
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