Lysobacter soyae: H8L67_04235
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Entry
H8L67_04235 CDS
T10230
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsy Lysobacter soyae
Pathway
lsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H8L67_04235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsy03400
]
H8L67_04235 (mfd)
Enzymes [BR:
lsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H8L67_04235 (mfd)
DNA repair and recombination proteins [BR:
lsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H8L67_04235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
AAA_30
UB2H
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QYR53704
LinkDB
All DBs
Position
complement(889007..892492)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSSKASSSPPLPRAGQQRAWWRAPGTPSGLAWAILRAAIAHEGPLLAVTPDNQQAHQLEN
DLRVLAGSDSGLDILPFPDWETLPYDSFSPHPEITSQRLATLHRLPQIHKGVVVVPVQTL
VQRLAPLAHIVGGSFNYARGEKLDLDAEKRRLESAGYRNVPQVLDPGDFAVRGGLLDVFP
MGTVTPYRIELFDDEIDTLRAFDPETQRSQDHVEHVRLLPGREVPVGDQPFENVMRILRD
RFEIDTRQSALYKDLKSGLLPAGIEAWLPLFFTDASGNSKTSTLFDYLPASTLPVLCEDI
GANLDRFWQQTGNRYEQRRYDPERPILPPAELYLTPDQLRERLNQGLRVEVCGSAHPRFA
DATPLGVQPVPPLPLASHSETPAAAFKQFAAAYPGEIRIAAESAGRREALLDVFRAAGIA
PDIRTTLALGDAVQPKHISICVAPLSDGFALDDPLVAVLTEQQFFPERAAHVRRSRKAAR
EPEAIIRDLGELTEGAPIVHEDHGVGRYRGLITLVTDGEKGEYLDIEYAKGDRLYVPVSQ
LDLVSRYSGASPETAPLHSLGGERWTKAKQKAAEKVRDVAAELLDIQARRQARAGISLET
DRALYEPFAASFPFEETPDQYAAIESVLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAA
ASAGKQVAVLVPTTLLAEQHYRNFRDRFADWPLKVEVLSRFKTAKETKLALERLERGDID
VIVGTHKLLSPDIRFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNM
AMAGLRDLSIIATAPTNRLAVQTFVAPWDTALLREAFQRELGRGGQVYFLHNDLDSIERM
KTTLEELIPEARIGVAHGQMPERELEQVMLDFQKQRVNVLLCSTIVESGIDIPNANTMII
NRADMFGLAQLHQLRGRVGRSHHRAYAYLLIPDDRSITSDARKRLEAISSMDELGAGFLL
ATHDLEIRGAGELLGEDQSGQMTEVGFSLYTELLERAVRSIKEGKLPEYDADAARGAEVE
LHVPALIPDDYLPDVHTRLTLYKRISAARTESALRDLQIELIDRFGLLPDPVKHLFAVAE
LKLEATRMGIKKLVLGENGGRVQFVEKPDIDPMALIKLIQTQPNRYRMDGPQKLRIVDAD
LPDFASRMKQAQGLLTLLRIS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagttccaaggcttcgagttccccaccgcttccgcgcgctggtcagcagcgcgcgtgg
tggcgtgcgcccggcactcccagcggactcgcttgggccattcttcgtgcggccatcgca
catgaggggccgttgctggccgtgacgccggacaatcaacaggcgcaccaactcgaaaac
gatttgcgcgtactggcaggcagcgattccggcttggatatcttgccgtttcccgactgg
gaaactctgccctacgacagtttcagtccgcatcctgaaatcacctcgcaacgcctggca
accttgcaccggttgccacagatccacaaaggcgtggtggttgttccggtgcaaacactg
gtacagcggctcgcccccctcgcccacattgtcggcgggagtttcaattacgctcgtggc
gaaaaactcgatctcgatgccgagaagcgtcgactggaatcggccggctatcgaaacgtc
ccacaagtactcgaccccggtgattttgcagtgcgcggcggtttacttgacgttttccct
atgggtacggtcacgccttaccggatcgaattgttcgacgacgagatcgacacactcagg
gcattcgaccctgagacacagcgttcgcaggaccatgtcgaacacgttcgcctattgccc
ggtcgtgaagtcccggtcggtgaccaacctttcgagaacgtcatgcgtattttgcgtgac
cgcttcgagatcgatacgcgccaaagcgcgctttacaaagatttgaagtcaggcttgctg
cccgcgggcatcgaagcttggctgcctttgttcttcaccgatgcgtcgggcaattcgaaa
acgtcgacgctgtttgactatttgcccgccagcaccttgccggtgttgtgcgaagacatc
ggcgcgaatttggatcgattctggcaacagaccggtaatcgctacgaacaacgccgctat
gatcccgagcggccgattctgccgccggccgagctgtatctgacgcccgatcagttgcgc
gaacgtttgaatcagggcctccgggtggaggtgtgcgggagcgcgcatccgcgttttgct
gacgccacgccgttgggagtccaaccggttccgccattgccgttagccagccattccgag
acccctgccgcagccttcaagcaatttgccgccgcgtatcccggcgaaatccgcattgcg
gcggaatccgccggccgccgcgaggcattgctcgacgtgttccgtgccgccggaatcgca
ccggatattcgcacgacgcttgctctgggtgatgccgtacaacccaagcacatcagcatt
tgtgttgccccgctatcggatggtttcgcgcttgacgatccgctcgtcgccgtactgacc
gagcaacaattcttccccgaacgcgcggcacatgtgcggcgctcgcgcaaagccgcgcgc
gaaccggaagcgatcattcgcgatctgggtgaactcacggaaggtgcgccgatcgttcac
gaagaccacggtgtcggccgctatcgcggactgatcacgctggtcaccgatggcgaaaaa
ggcgaatacctcgacatcgaatatgcgaaaggcgaccgcttgtatgtgccggtgtcgcaa
ttggatttggtgtcacgctattccggcgcatcgccggaaaccgcgccgctgcattcgctg
ggtggcgagcgttggaccaaagccaagcagaaggccgccgaaaaagtccgcgacgtcgcc
gcagagcttttggatatccaagccagacgtcaggcacgcgcagggatctcactggaaacc
gatcgcgctttgtacgagcctttcgccgccagtttccccttcgaggaaacccctgaccaa
tacgcggcaatcgagtcagtgttgcgggatctcgcctcttcccaaccgatggaccgggtg
gtctgcggcgacgttgggtttggcaaaaccgaggtcgctgtgcgcgcggcatttgccgcg
gcatccgccggcaaacaggtggcagtgctggtacccacgaccctgcttgcagaacagcat
taccgcaacttccgcgatcgtttcgccgattggccgctgaaagtcgaagtgctttcgcgc
ttcaaaaccgccaaggaaaccaaactcgcgttggaacggctggagcgcggcgacatcgac
gttattgtcggcacccacaaattgctgagccccgatatccgcttcaaggacttggggctg
gtgatcgtggatgaagagcaacgcttcggcgtgcgtcaaaaagaggccctcaaagctttg
cgcgcaaacgtccatctgctgacgctgaccgccacgccgattccgcgcaccttgaacatg
gccatggccggcttgcgcgacttgtccatcatcgccactgccccgaccaatcgcctcgcc
gtgcaaacctttgtggccccgtgggatacagcgttgctcagagaagcgttccagcgtgag
cttggtcgcgggggtcaggtgtacttcctgcataacgatctggacagcatcgagcgcatg
aagacaacactcgaagaactgattccggaagcacgcatcggtgtcgcgcacggccagatg
cccgaacgcgagctcgagcaagtgatgctcgacttccagaagcaacgtgtgaacgttttg
ctgtgttccactatcgttgagtctggcatcgacattccgaatgccaacacgatgatcatc
aatcgcgcggacatgttcggcctggcgcaattgcaccaactgcgcgggcgcgtcggccgt
tcgcatcatcgcgcctatgcctatttgttgatccccgacgaccgttccatcacgtctgat
gcgcgcaagcggttggaagcgatcagctcgatggacgaactgggcgcaggcttcctgctt
gcgacccatgatcttgagattcgcggtgcaggcgaattactcggtgaagaccagagcggt
caaatgaccgaagtcggtttcagcctgtatacggaacttcttgagcgtgccgttcgcagc
atcaaggaaggcaaattgccggaatacgacgctgacgcggcgcgcggtgccgaggtcgaa
ctgcatgtgccggcgttgattccggacgactacttgccggacgtgcacacgcggctgacc
ttgtacaagcgcatcagtgccgcgcgcaccgaatccgccttgcgtgatttgcagatcgag
ctcatcgatcgcttcggattgctacctgaccccgtcaaacatctgttcgccgtggccgag
ctcaagcttgaagccacgcgcatgggcatcaagaaactggtgttgggcgaaaacggcgga
cgcgttcaatttgttgaaaagcctgacatcgatccgatggcattgatcaagttgattcaa
acgcaacccaaccgctatcgcatggacggcccgcaaaaactgcgtattgtggacgccgac
ctgcccgactttgccagccgaatgaaacaagcgcagggcttgctcaccctgctgcgtatt
tcttga
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