Lysobacter soyae: H8L67_05940
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Entry
H8L67_05940 CDS
T10230
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lsy Lysobacter soyae
Pathway
lsy03410
Base excision repair
lsy03430
Mismatch repair
lsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
H8L67_05940 (recJ)
03430 Mismatch repair
H8L67_05940 (recJ)
03440 Homologous recombination
H8L67_05940 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsy03400
]
H8L67_05940 (recJ)
DNA repair and recombination proteins [BR:
lsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
H8L67_05940 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
H8L67_05940 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H8L67_05940 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QYR52161
LinkDB
All DBs
Position
complement(1241505..1243220)
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AA seq
571 aa
AA seq
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MRDETRSALKIVRRSTPVATEGSAVWPDHWPKVLRQVHAARGSISAASAMPRLDVMPHFS
GLAMIETAVDLLESAIQAQKHIVVTADFDCDGATACAVAVRGLKMLGATRVSFAVPDRAI
HGYGLSPALVDDLKALSPDLIVTVDHGIACMDGVRAAKAAGWQVLVTDHHLPGDRLPPAD
AIVNPNQPGDTFPSKALAGVGVMFYVLLALRSRLGASSVDLSTLLDLVAIGTVADMVKLD
ELNRALVLAGLSRMRSGRMHAGVAALMAVAGRHNATLTPTDIGFSIGPRINAAGRLEDMR
VGIECLLTDDPGIAANLAQLLDSINAERRQLQSAMVESGDFLAETACLDESNAQVLCLHD
PAWHAGVIGLVASKLKDKLHRPVIAFAPSGNEDGMLRGSARSITGFHMRDALALVDARHT
GLITRFGGHAMAAGLTLPAANLDAFRDAMQSVGAEWLTPAMLQAVVESDGPLSVEDMGLQ
TAVSLRDGGVWGQAYPEPLFDDAFDVVSCRALKDKHLKLTVQKDGKMFNAIQFNAPRREA
VGNVRLVYQLAVDDWRGGTEVQLLVRHLEQI
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacgagacgcgcagcgcactgaaaatcgtgcgtcgttccacgccggtcgcgacc
gagggtagcgctgtctggcccgatcattggcccaaggttttgcgacaggtgcacgcggca
cgcggttcgatctctgcggcgtccgccatgccgcggctcgatgtcatgccgcatttctcc
ggactcgcaatgatcgagaccgcggtcgatttgcttgaatccgcgatacaggcgcagaag
cacattgtcgtgaccgcggacttcgactgtgatggggccacggcgtgcgcggtcgccgtc
agaggtctgaaaatgctcggcgccacgcgagtgagcttcgcggttcccgatcgtgcgatc
catggttacggcttgtcgccggcactggttgacgacctcaaagccctgtcgccggatttg
atcgtcacggtggatcacggcattgcttgcatggacggcgttcgcgccgcgaaagcggcg
ggctggcaggtgttggtcaccgaccaccatttgccgggcgaccgactgcctcccgctgac
gccatcgtcaacccgaatcagccgggcgatacctttccatcgaaggcgttggccggcgtc
ggcgtgatgttctacgttttgctggcgctcagatcgcgccttggcgcgtcgtccgttgac
ctttccacactgctcgacctggtggcgatcggcaccgtggctgacatggtcaagttggac
gaattgaaccgcgccttggtgttggccggattgtcgcgaatgcgcagtggccggatgcac
gccggtgtcgctgcactcatggcggttgccggccgacataacgcgacgttgacgccgacg
gacatcggtttctccatcggtccgcgcatcaatgccgccggtcgcctcgaagatatgcgc
gtcggtatcgagtgtttgttaaccgatgacccgggtattgccgcgaacttggcgcaatta
ctggattcgatcaacgctgagcgtcggcaattgcaaagtgccatggtcgaaagcggagat
tttctcgccgagaccgcatgtcttgatgaatccaatgctcaggtcttgtgtctgcacgac
ccggcctggcatgcaggtgtcatcgggttggtcgcctcaaaactcaaagacaagttgcat
cggcctgtcattgcattcgccccctcgggcaatgaggacggcatgttgcgcggctcggcg
cgctccatcaccggtttccacatgcgtgacgcactcgcactggtagacgcgcggcacaca
ggtttgatcacgcgtttcggcggccatgccatggcggcaggcctcacacttcctgctgcg
aatttggacgcgttccgcgacgcgatgcaatctgtgggtgcggaatggttgacccccgcg
atgcttcaggccgtcgtcgaatcggacggcccgctaagtgttgaggacatgggtttgcag
acggcagtctcgcttcgtgacggcggtgtctggggtcaggcttatccggagccgttgttc
gacgacgcgttcgacgtggtgtcttgccgtgcgcttaaggacaagcacctcaagttgacc
gtgcaaaaggacggcaaaatgttcaacgccatccagttcaatgcgccacggcgggaggcc
gtcggcaatgtccggctcgtctaccaactggccgtcgatgactggcggggtggcaccgag
gttcagctactggtgcggcacctcgaacagatctaa
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