Lysobacter soyae: H8L67_06170
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Entry
H8L67_06170 CDS
T10230
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lsy Lysobacter soyae
Brite
KEGG Orthology (KO) [BR:
lsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsy03009
]
H8L67_06170 (rlmD)
Enzymes [BR:
lsy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H8L67_06170 (rlmD)
Ribosome biogenesis [BR:
lsy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H8L67_06170 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
Methyltr_RsmB-F
RrnaAD
MTS
TRM5-TYW2_MTfase
Methyltransf_11
TRAM
Cons_hypoth95
Methyltransf_23
Methyltransf_15
Methyltransf_12
UPF0020
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QYR52204
LinkDB
All DBs
Position
complement(1283504..1284841)
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AA seq
445 aa
AA seq
DB search
MARNRIDKTPFPIHITGMSHDGRGVARREDGAHAGKAMFVSGALPGETVMVEQTKRSRQF
DEGRTVEVLTASADRVEPRCPHFGVCSGCVLQHLDAGKQIGLKQQELLDNLQRIGHVTPK
EVLAPLGDASWGYRRKGRFSVRHVLKKGKTLVGFRELDPRFVADIRECHTVIPEIGMKVG
LLAELIDQLDARNDIPQVEFIAGDDTVALVFRHLNALSESDLEKLKAFGEREGFAIHLQP
GGVSTVHALWPESSKLAYKLTPWNVELKFKPLDFIQVNRGLNEKMIANALDLLEPEPGER
ILDLFCGLGNFTLPLARVASEVVGVEGDAGLVQRAKENAARNALDNVQFYTADLATPLQG
QGWIKQKFDRLLLDPARTGADGVLKQLPLDGLKRIVYVSCHPGSLARDAGWLVNEAGWTL
MKAGVMDMFPHTAHVESIAVFEKLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgcaaccgaatcgataaaacgccttttccgatccacatcacgggcatgagtcat
gacgggcgcggtgtcgcccgccgagaagacggcgcacacgccggtaaagccatgtttgtg
tccggcgcgctgcccggcgagacggtgatggtcgaacagaccaaacgctcgcggcagttc
gacgaagggcgcaccgtggaggtgttgaccgcctcggcagatcgcgtcgagccgcgttgc
ccgcatttcggtgtgtgcagcggttgcgttcttcaacatttggatgcggggaagcaaatc
ggtttgaagcagcaagagctgctcgacaatttgcaacgcatcggacacgtcacacccaag
gaagtcttggcgccactgggagacgccagctggggctatcgccgaaaggggcgtttctcg
gtgcggcatgtgctgaagaagggcaagaccctggtcggctttcgcgagctcgatccgcga
ttcgtcgccgacattcgcgaatgtcataccgtcattcccgaaatcggcatgaaagtcggc
ctgctcgccgagctgatcgatcaactggatgcccgcaacgatattccgcaggttgaattc
attgccggtgacgacacggtggcgctggtattccggcacttgaatgcattgagcgaaagc
gatctcgagaagttgaaggcgttcggtgaacgggagggctttgccatccatcttcaaccg
ggtggtgtctcaacggtgcacgcgctctggcctgagtcgtccaaactggcctataagctg
acgccgtggaacgtcgagctgaaattcaagccgctcgatttcatccaggtcaatcgcggt
ttgaatgaaaaaatgattgccaacgcgctcgatctgcttgaacccgaacccggcgagcgc
attttggatctgttctgcggtttggggaatttcaccttgccgttggcgcgcgttgccagt
gaagttgtcggcgtcgaaggtgacgcgggtttggtccaacgggccaaggaaaacgctgcg
cgcaacgccttggacaatgtgcagttctacacggccgacttggccaccccgctgcaaggg
cagggatggatcaagcagaaattcgatcgattgttattggatcccgcacgtaccggcgcc
gacggcgtgttgaagcaattgccgctcgacggtctgaagcgcattgtctatgtcagctgc
catccgggttcgttggcgcgggatgccggttggctggtcaacgaagcgggctggaccttg
atgaaagccggcgtgatggacatgttcccgcataccgcgcatgtcgaatccatcgccgtc
ttcgagaagttgaagtaa
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