Lysobacter soyae: H8L67_08015
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Entry
H8L67_08015 CDS
T10230
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lsy Lysobacter soyae
Pathway
lsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8L67_08015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsy03019
]
H8L67_08015
Enzymes [BR:
lsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H8L67_08015
Messenger RNA biogenesis [BR:
lsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H8L67_08015
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UTP25_NTPase-like
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QYR52531
UniProt:
A0ABX8WLM5
LinkDB
All DBs
Position
complement(1658499..1659845)
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AA seq
448 aa
AA seq
DB search
MNFESLGLSPAILRALSERNYNTATPIQAQAIPLVLSGHDVLGAAQTGTGKTAAFALPVL
NRLSKTTPPAGPRKPRALILVPTRELAVQVADSFKKYGRHLRLNVNTLFGGVGMQPQVQQ
LRLGVDVLVACPGRLIDHLDRGSVKLDAIEVLVMDEADRMLDMGFLPAIKRIINRLPKDR
QTMMFSATFEARIKQLALEFMNNPKQVQVATQNAVAHTVTHRVHPVDGSRKKDLLVQILS
QRHKDQVIVFGKTKHGCNRLAEQLEKAGLPSVAIHGNKSQGARQKALTDFKSGKARILVA
TDVAARGLDIPDLPLVINHDLPMVAEDYVHRIGRTGRNGATGEALSLVCAEEGHLLKQIQ
RVLSADIVMEHVNGFTPTRAINLNAKAPKQAPRGPRPPRAAGATRSHSNNNAPGGFGKPK
AQAHAGKPAGRPAGNRPPVRTNRNAPRG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaatccctcgggctttcgcccgcaatcttgcgtgcgctttcggaacgcaat
tacaacaccgctaccccgattcaagcgcaagcgattccgctcgtgctgtcgggtcatgac
gtcttgggtgcggcccagacgggtaccggtaagacggccgcattcgcgctaccggtgctg
aaccgcctcagcaaaaccacgccaccggccggcccgcgcaagccgcgcgcactgatcttg
gtgccgacgcgtgagttggcggtgcaggtggccgacagcttcaagaaatacggccgccat
ttgcgcctgaacgtgaataccttgttcggtggcgtgggtatgcagccgcaagtgcagcaa
ctgcgtctgggtgtggacgtgctcgtggcatgccccggtcgtttgatcgaccatctcgat
cgcggcagcgtcaagctcgacgctattgaagtgctggtgatggacgaggccgatcgcatg
ctcgacatgggctttttgccggcgatcaagcgcatcatcaaccgcttgccaaaagaccgc
caaaccatgatgttctcggccaccttcgaagcgcgcatcaagcaactcgctttggagttc
atgaacaatccgaagcaagtgcaagtggccacgcaaaacgccgtggcgcacaccgtgacg
caccgtgtgcatccggtggatggctcgcgcaaaaaagatttgttggtgcagattctgtcc
cagcgtcacaaggaccaagtcattgtcttcggcaagaccaagcacggttgcaaccgtttg
gccgaacagcttgaaaaggcgggcctcccgtcagtggccattcacggcaacaagagccaa
ggtgcgcgtcaaaaagcattgaccgatttcaagtcgggcaaggcgcgcattctggtggcc
accgatgtggctgcacgcggcttggacattccggatctgcccttggtgatcaatcatgac
cttccgatggtcgccgaggattacgtgcaccgcatcggccgtaccggtcgtaacggcgcg
accggtgaagcgctgtcactggtctgtgcggaagaaggccatttgttgaagcaaatccag
cgtgtgctgagcgcagacatcgtgatggaacacgtcaacggttttacgccgacgcgtgcc
atcaacctcaacgccaaggcgccgaagcaagcgccgcgcggtccgcgtccgccgcgcgcc
gccggtgcgacacgctcgcactcgaacaacaatgcaccgggtggtttcggcaagccgaag
gcacaagcccatgcgggcaagcctgcaggtcgtccggcaggcaatcgtccgccggtgcgt
accaaccggaatgcgccgcgcggttga
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