Leptotrichia shahii: JCM16776_0029
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Entry
JCM16776_0029 CDS
T06589
Symbol
rep
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lsz
Leptotrichia shahii
Pathway
lsz03420
Nucleotide excision repair
lsz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCM16776_0029 (rep)
03430 Mismatch repair
JCM16776_0029 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsz03400
]
JCM16776_0029 (rep)
Enzymes [BR:
lsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCM16776_0029 (rep)
DNA repair and recombination proteins [BR:
lsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JCM16776_0029 (rep)
MMR (mismatch excision repair)
Other MMR factors
JCM16776_0029 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
AAA_11
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBM39838
UniProt:
A0A510JKJ8
LinkDB
All DBs
Position
complement(33104..35128)
Genome browser
AA seq
674 aa
AA seq
DB search
MLSKINDKNLLKEKEILKNLFKNISKNKSTLFNAGAGAGKTYSLIECLKYVIREEGRNLE
NKNKKVICITYTNVATNEIKERLGNTNLILVSTIHERIWSLINNKLYQSKLVEIHFEYTK
EKIKEENEKLKKNKKYLLYNKEEKSYINEIISKTNIKIQFLNKDNFEEELKKENISDEIF
FDMKVTNFKEIYKKLKKISKLENCLKEIENKKYKNIEYTPLFNFDVLHKMKISHDTLLEY
GYRMIKKFDLLKQIIIDKYPYIFIDEYQDTDEKVVKIMNLLDEYSKKINHKFYVGYFGDY
VQNIYNSGVGESIKELHTDLDNVYKKYNRRSAKEIIEVANKIKKNEFPQESIYEDSDGGT
IEFFSGKEEEIKAFLEKVEKEWNITQDSPLHCFILTNKLIAEYSGFQDIYDFFYKSDYYK
KNYNQLTSELFSNDMTKLGSIPSFFFRISKFLNDLQNEKTFVTDIFSKVYRGKNLKQLRT
LKKIMVEIRNSKKETLNDYLEKIFELYNRNEDLDYKKIVKNVFQIEDISLENIKKYIIQE
LFDDEYGNNINEVENFLKIEINQYFNWYRYLIEEKGEKIYYHTYHGTKGREFENVVIIME
NSFGRNNKNLFFDFFKNYNKKIEEKDLKKHNEARNLLYVSVTRAIKNLKIFYIDDISEFS
GNIKKVFGDIKKFQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgttatcaaaaataaatgataaaaatttattaaaagaaaaagaaattttaaaaaattta
tttaaaaatatatctaaaaataaaagtactctttttaatgcgggagcaggtgcagggaaa
acctattctctaattgaatgcttaaaatatgttataagagaagaaggaagaaatttagag
aataaaaataaaaaagtaatatgtataacttatacgaatgttgcaacaaacgaaataaaa
gaaagattgggaaatactaatcttattttagtttcaacaattcatgaaaggatttggagt
ttgataaataataaactttatcaatctaagttagtagaaattcattttgaatatactaaa
gagaagataaaagaagaaaatgaaaaattgaagaagaataagaaatatttgttgtataat
aaagaagaaaaaagttatattaatgaaatcatatcgaaaactaatataaaaatacaattt
ttgaataaagataattttgaagaagaattgaaaaaagaaaatatttctgatgaaatcttt
tttgatatgaaagttacgaattttaaagaaatttataaaaaactaaaaaaaatatctaaa
cttgaaaattgtctaaaagaaatagaaaataaaaaatataaaaatatagagtatacgcct
ttatttaattttgatgtgttacataaaatgaaaataagccatgatactctactagaatac
ggatatagaatgataaaaaaatttgacttattaaaacaaataataattgataaatatcct
tatatttttatagatgagtatcaagatactgatgaaaaagtagttaaaataatgaattta
ttagatgaatattcaaaaaaaattaatcataaattttatgtcggatattttggagattat
gtacagaatatttataatagtggagtaggtgaatcaataaaagaattgcatactgattta
gataatgtctataaaaaatataatagaagatctgctaaagaaattattgaagttgcaaat
aaaattaaaaagaatgaatttcctcaagaatctatatatgaagatagtgacggtggaaca
atagagtttttttctggaaaagaagaagaaataaaagcctttttagaaaaagtagagaaa
gaatggaatataacacaagatagtcctttacattgttttatattaacaaacaagttaatt
gcagaatattctggttttcaagatatttatgattttttttataaaagtgactattataaa
aagaattataaccaattaacgtcagaattattttcaaatgacatgacaaaattaggaagt
attcctagtttcttttttagaataagcaaatttttaaatgatttgcaaaatgaaaaaact
tttgtaacagatattttcagtaaagtctacagagggaaaaatttaaaacaattaagaact
ttaaaaaaaattatggtagaaattagaaatagcaaaaaagaaactttaaatgattattta
gaaaaaatatttgaattgtataatagaaatgaagatttagattacaaaaaaatagtaaaa
aatgtatttcaaattgaagatatatccttagaaaatataaaaaaatatattattcaagaa
ctttttgatgatgaatatggaaataatataaatgaagttgaaaattttttgaaaattgag
attaatcaatattttaattggtacagatatttaatagaagaaaaaggagaaaaaatatat
tatcatacgtatcatggaacaaaaggtagggaatttgaaaatgttgttataataatggaa
aattcttttggaagaaataacaaaaatcttttttttgatttttttaaaaattacaataag
aaaattgaagaaaaagatttaaaaaaacataatgaagcaaggaatttgttatatgtttct
gtaactagagcaattaaaaatcttaaaatattttatatagatgatatttcagaattttct
ggaaatataaagaaagtatttggagatataaaaaagtttcaataa
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