Leptotrichia shahii: JCM16776_0275
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Entry
JCM16776_0275 CDS
T06589
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lsz
Leptotrichia shahii
Pathway
lsz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCM16776_0275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsz03021
]
JCM16776_0275
03400 DNA repair and recombination proteins [BR:
lsz03400
]
JCM16776_0275
Enzymes [BR:
lsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCM16776_0275
Transcription machinery [BR:
lsz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCM16776_0275
DNA repair and recombination proteins [BR:
lsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCM16776_0275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
BBM40070
UniProt:
A0A510JL61
LinkDB
All DBs
Position
301027..305094
Genome browser
AA seq
1355 aa
AA seq
DB search
MSIRDFDSIQIKLASPEKILEWSYGEITKAETINYRTLKPEMDGLFCERIFGPSKDYECA
CGKYKRMRYKGMVCEKCGVEVTTSKVRRERMGHIKLATPIAHIWYSKGTPNKMSLLLGIS
TKELESVLYFSRYIVTDPGETGLEKGQILTEREYKLHESQFKGEFTAKMGAEGVLTLLEE
IDLHELESKLQNEMDVEHSTQKRRKVIKRLKVVRDLIEAGNRPEWMILTVLPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNIRLKKLMSIKAPEIVIKNEKRMLQEAVDALIDNGR
RGKPVVNQSNRELKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMNQCGLPKK
MALELYKPFLMRELVKRELASNIKVAKKMVEEEDENVWELIEEIIKNHPVLLNRAPTLHR
LSIQAFEPILIEGKAIRLHPLVCSAFNADFDGDQMAVHLVLSQEAQMEAKLLMLATNNII
APSNGGPIAVPSQDMVMGCYYMTKEKKGSKGEGKVFSSRNQLITAYQSGKISVHAVVKVR
VENSILETTPGRLMFNLILPKEVRNYGITFGKKELKNLIAELYKRYGFEKTSKLLDDIKE
FGYHYGTLAGITVGIEDLKIPETKKEILENAEKDVAEVEKQYKDGEIINEERYRKTVGIW
AEATERVTKDMMDNLDEFNPVYMMANSGARGSIAQMRQLGGMRGLMADTQGRIIEMPIKA
NFREGLNILEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNHDDCGCEHGIV
VSDLMDAGQVIEKLSERIYGRNLATDLVHNGEVIATRNTLIDDELIKKIEELDIREVEIR
TPLTCKLEKGVCKKCYGLDLSNHKEILKGEAVGVIAAQSIGEPGTQLTMRTFHTGGVATA
ASVQSDYKADVSGKIKFRDISTLVNEEGKEIVVSQNGRLIIGKHRYEIQSGSVLHVKDGD
TVEKGQVLVEFDPYQTPIITSEEGKVEFRDIYVRENIDIKYGVTEKVAIKPVESSDVNPR
IIIYTKDDRRVEYAVPYGAYLMVNEGEIVKKGQTITKILKTGEGNKDITGGLPRVQELFE
ARNPKGKAILSEFAGRVVFSDKKKKGMRLILIEDPETGELIQEYTVPVGEHLVVTNEMLI
EKGAKITDGPVSPHDILKIKGLVEAQQFILESVQQVYREQGVAVNDKHIEIIVKQMFQKI
KIKEAGDSLFLEDELIDKKIVERENEILISKGKRPATYEPVIQGITKAAVNTESFISASS
FQETTKVLANAAVEGKTDRLEGLKENVIIGKKIPGGTGFRDYKYLDATLKSDIVEDSEVE
MEANTNEGNEEVEAVSDVLENETVEFVENTEETEV
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagagattttgacagtattcaaataaagttggcatcgccagaaaagattttg
gaatggtcgtatggtgagattacgaaagccgaaacaataaattatagaacattaaagcct
gaaatggacggattattctgtgagagaatatttgggccgtctaaggactatgaatgtgcc
tgcgggaagtataagagaatgcgttacaaaggcatggtttgtgaaaaatgtggtgttgaa
gtgacaacttcaaaagttagacgtgaaagaatgggacatattaaactggctacaccgatt
gcacatatttggtattctaaaggtacgcccaacaaaatgagtcttttgttgggaattagc
acaaaagaattggaatcagttttgtatttttcaagatatattgtaactgatcctggagaa
actgggcttgaaaaaggtcaaattttgacagaaagagaatataaattgcatgaaagtcaa
tttaaaggtgagtttacagcaaaaatgggtgctgaaggagttttaactttacttgaggaa
attgatttacatgaattggaaagtaaacttcaaaatgagatggatgtggaacattctaca
caaaaaagaagaaaagttataaaaagattaaaagtagtaagagatttgatagaagctgga
aatagacctgaatggatgattttaactgtgttgccagttattccagctgatttaagaccg
atggttcaattagatggtggaagatttgctacttctgacttgaatgatttgtatagaaga
gtaattaatagaaatatcaggcttaaaaaattgatgtcaattaaagctcctgagattgta
ataaaaaatgaaaagagaatgttgcaggaagctgtagatgcgttaattgataatggtaga
cgtggaaaacctgttgttaatcaaagcaacagggaattgaaatcactttctgatatgtta
aaagggaaacaaggacgttttagacaaaatttattgggaaaacgtgtggattattcagga
aggtcggttattgtcgttggaccaagcttgaaaatgaatcaatgtggattgcctaaaaag
atggcacttgaactgtataagccattcttgatgagagaacttgtaaaaagagaattggct
tcaaatattaaagttgctaagaaaatggtagaagaagaagatgaaaatgtatgggaattg
attgaagaaattattaaaaatcaccctgtgcttctaaatcgtgctccaacgttgcataga
ctttcgattcaggcatttgagccaatcttgatagaaggaaaggcaataagacttcatccg
cttgtatgttctgcatttaatgcggatttcgatggtgaccaaatggcagttcacttagta
ttatctcaagaagcgcaaatggaagcaaaattacttatgcttgctacaaataatattata
gctccttccaatggtggaccgatagccgttccgtcacaagatatggtaatgggatgttat
tatatgacgaaagagaaaaaaggttcaaaaggagaaggaaaggtattttctagcagaaat
cagttaattactgcttatcaaagcggaaaaatatcagttcatgctgtagtaaaagttaga
gtggaaaatagtattcttgaaacaacaccaggaagattaatgtttaacttaatcttgcca
aaagaagttagaaattatggaattacatttggtaaaaaagaattgaaaaatctaattgct
gaactttataagagatatggatttgaaaaaacttcaaagttactggatgatattaaagaa
tttgggtatcattatggtacacttgctggaattacagttggaattgaagatttgaaaatt
cctgaaactaaaaaagaaatacttgaaaatgctgaaaaagatgtagcagaagttgaaaaa
caatataaagatggagaaattattaacgaagaaagatacagaaaaacagtgggtatctgg
gcagaagctactgaaagagttacaaaagatatgatggacaatcttgatgaatttaatcca
gtatatatgatggcaaactctggagccagagggtcaatcgcacaaatgcgtcaattaggt
ggaatgcgtggacttatggcggatacgcaaggtagaattattgaaatgccaattaaagcg
aactttagagaggggcttaatattttggaattctttatgtcttcgcatggagccagaaag
ggacttgccgatactgcactaagaaccgcggattcaggatatttgacaagaaggctagtt
gatatttcacacgaagttattgtaaatcatgatgactgcggatgtgaacacggaattgtc
gtatcagacttgatggatgctgggcaagttattgaaaaattaagtgaaagaatttatgga
agaaatttggcaacagatttggttcataatggagaagttattgcgactagaaatactttg
attgatgatgaattgattaaaaagattgaagaattggatattcgtgaagtggaaatcaga
acacctttgacttgtaaattggaaaagggagtttgtaaaaaatgttacggattggatctt
tctaaccacaaggaaattttgaaaggggaggcagtaggagttattgcggcacagtcaatc
ggagaacctggtacacagcttacaatgcgtactttccatactggaggagttgccacagca
gcttctgttcaatctgattataaagcagatgtttctgggaaaattaaatttagagatatt
tctacccttgtaaatgaagaaggaaaggaaattgttgtttctcaaaatggacgtttgata
ataggaaaacatagatatgaaattcaatctggttcagttttacatgtaaaagatggagac
acagttgaaaaaggacaagtcctagttgaatttgacccttatcaaacaccgattattaca
tctgaagaaggtaaagtggaatttagagatatttatgtgagagaaaatattgacataaaa
tatggagttactgaaaaagtggcaataaaacctgtggaaagtagcgatgtaaaccctaga
attataatttatacaaaagatgacagaagagtggaatatgcagttccttatggggcatat
ttaatggtaaatgaaggagaaatagttaaaaaagggcaaactattacaaaaatcttgaaa
acaggagaaggaaataaggatattactggaggacttcctcgtgttcaggaattgtttgaa
gcgagaaatcctaaaggaaaagctattttatcagaatttgcaggacgtgttgtattctca
gataaaaagaaaaaaggtatgagattaatcctaattgaagatcctgaaactggggaatta
attcaagaatatacagttcctgtgggggaacatctggttgtaactaatgaaatgttaatc
gaaaaaggtgctaaaattacagatggaccagtttcacctcatgatatcttaaaaattaaa
gggcttgtagaagcacagcaatttattttagaatcggtgcaacaagtttatcgtgaacaa
ggggttgcagttaatgataagcatattgaaataatagtaaaacaaatgttccaaaaaatt
aagattaaagaagctggagattcgctattccttgaagatgaattgattgataagaaaatt
gtggaacgtgaaaatgaaatattgatttcaaaaggaaaacgtccagcaacttatgagcct
gtaatacaaggtattacaaaagctgcagtaaatacagaaagtttcatttcagcatcatca
ttccaggaaacaacaaaagttcttgcaaatgctgcagttgaaggaaaaacagacagactt
gaaggacttaaggaaaatgtaatcattggtaagaaaataccgggaggtactggttttaga
gattataaatatttggatgcaactttgaaaagtgatatcgtagaagattctgaagtagaa
atggaagctaatacgaatgaaggaaatgaagaagttgaggcagtttcagatgttttagaa
aatgaaacagtagaattcgtagaaaatacagaagaaacagaagtttag
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