Leptotrichia shahii: JCM16776_0660
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Entry
JCM16776_0660 CDS
T06589
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lsz
Leptotrichia shahii
Pathway
lsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM16776_0660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsz03019
]
JCM16776_0660
Messenger RNA biogenesis [BR:
lsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JCM16776_0660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BBM40440
UniProt:
A0A510JM76
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Position
730011..731585
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AA seq
524 aa
AA seq
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MSISITILLIVIFSFLTFFIAYFFGSSIFKKKYGDLNELELKIVDAKRRLETSKKEVERE
IESFRKEETLKVKEELLNEKKIADDEIKKMKSELAIKEERIAKKEETLETKMERLEEKEA
KSDKHREKLFRREKELEEMIASEEKELERISELTQEDARKIILTKLENELDHDKAVLIRD
YEYNLDREKDRIAKRIISTAIGKASADYVVDSTISVIQLPSEEMKGRIIGREGRNIRAIE
AATGVDLIIDDTPEAVVLSSFDGVRREVAKIALEKLISDGRIHPTKIEEVVAKAQHEVDE
SILDAAEQAILEVGIPTLPREVLKVFGRLKFRTSFGQNILQHSIEVAHIAATLAAEIGAN
IDIAKRAALLHDIGKAFSHEQEGSHAINGGEFLRKFSKESEIVINAVESHHNEVEQLSIE
AVIVQAADSISASRPGARRETLSNYLKRLEQLEEIANSHEGIESSYAIQAGRELRLIVHP
DNVDDDKATILARDVAKEIEEKMQYPGQIKVTVIRETRAVEYAK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgagcatatcaataacaattttgttgattgttattttttcttttttaactttttttata
gcttatttttttggaagttcaatttttaagaaaaaatacggagatttgaacgaactagaa
ttaaaaatcgttgatgctaaaagaagacttgaaacatcaaaaaaagaagttgaaagagaa
attgaatcgtttaggaaagaagagacattaaaagtaaaagaagaattgttaaatgagaaa
aaaatagcagacgacgaaataaaaaaaatgaaatcagagcttgccattaaggaagaaaga
attgccaaaaaagaggaaacattggaaacaaaaatggaacgattggaagaaaaagaagct
aaaagtgataaacatcgtgaaaaattatttcggagagaaaaagaactggaagaaatgatt
gcaagtgaggaaaaggaactggaaagaatttctgaattgacacaagaagatgctagaaaa
atcattttaactaagcttgagaatgaattagatcacgataaagctgtgttaattagagac
tatgagtataatttagacagggaaaaagacagaattgctaagagaattatttctactgca
attggaaaggcttctgctgactatgttgtagattccacaatttcagttattcagctgcca
agtgaagaaatgaaaggtagaattattgggcgtgaaggaagaaatataagagctattgaa
gcggcgactggagttgacctgataattgacgatactcctgaggcagttgtgttatcttcg
tttgatggcgtaagaagagaagtggctaaaattgcacttgaaaaattaatctcagacgga
cgtattcatccaacaaaaatagaagaagttgtagcaaaagcacagcatgaagtagatgaa
agcatattagatgctgcggaacaggctattttagaagtgggaattccaacattaccacgt
gaagttttaaaagtatttggacgcttgaaatttagaacatcttttggacaaaatatttta
cagcattcaatagaagttgcacatatagcggcaacactagctgcagaaattggtgcaaat
attgatatagccaaaagagctgcattattgcacgatataggtaaggctttttcacatgaa
caggaaggttcacatgctataaatggtggagagtttttgagaaaattttctaaagaaagt
gaaattgtgataaatgcagtagaatcacatcataatgaagttgagcagttaagtattgaa
gcggtaatagtacaggctgcagattcaatttcagcttcaagaccaggagcaagacgtgaa
acattatcaaattacttaaaacgtctggaacaactagaagaaattgcaaacagccatgaa
ggaattgaaagttcgtatgcaattcaagctggaagagagctaagattaattgttcatcca
gataatgttgatgatgacaaggctacaatactggcaagagatgtagcaaaagaaattgaa
gaaaaaatgcaatatccagggcaaataaaagttacagttattagagaaactagagccgtg
gaatatgcaaaataa
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