Leptotrichia shahii: JCM16776_1986
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Entry
JCM16776_1986 CDS
T06589
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsz
Leptotrichia shahii
Pathway
lsz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCM16776_1986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsz03400
]
JCM16776_1986
Enzymes [BR:
lsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCM16776_1986
DNA repair and recombination proteins [BR:
lsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JCM16776_1986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
RecG_dom3_C
DUF2982
DUF7053
UB2H
Motif
Other DBs
NCBI-ProteinID:
BBM41734
UniProt:
A0A510JRA3
LinkDB
All DBs
Position
complement(2114114..2117311)
Genome browser
AA seq
1065 aa
AA seq
DB search
MNFNLSFLNKLKNKEKNILQSENNFYRGAIPWFLLCSEKKKIIYISTSNRNLENYHAMLE
NYYEMSEKQKDILTEKSKTGKKDSKESKNKLEVKKIIDIFENISQNEEDITGINIRLLDI
LKNQKQFILFVNLQITLDIFFEKVKFFSFETGKEYSFSKILEFLVENGYENSYLIEKKGQ
YSRRGDILDIFPPDLEHPVRLEFFGDELESIRVFDIDSQISVEKMEEIKVFGNLLSGNNY
ELIELIDELKAEDVTIVIENEELLDYKMEEFILLDRSREETYRKRYENLKKKSIFVQTKN
FSQEQIETFRDKNRLEKLSKIEDIYIFTNNYEKKMAEYGQILTEKENNLEIEKYELFEGF
IFNDNSKNADSKNRKNNFIVLTDRELDGYIYERKKKTTKAIKYKKVNQIIEGDYVIHVQY
GVGIYKGIQTMEERDYLKIKYADEDILYIPVEKLDRLEKYVSNDIEPQLFRLGTRGFKRK
RKKLEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPFEETEDQRNAINDVK
KDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERFKRRF
ENYPITIENLSRLTKSKSKDILKNLKSGIIDLVIGTHRLLSDDVQFKNLGLLIIDEEQKF
GVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITEVLDWD
EETIKMAILRELSRDGQVFYIYNDVKNMKEKLKELKEMLPDFVKIEFINGQLPPKEIKDK
LLRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQLKGRVGRSNRQGYCY
LLKTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGEILGDKQHGTIETFGYDL
YIKMLNEEIRRQKGEFVEKIENVEIILNERGFIPETYIERDERLNIYKRFAMLETDSELT
GLLDEIRDRFGKIPEQMKKFILSIKLKLFAEKHKIQRILETRNHFELYFLENAQEERAEL
SEKIEMKKVVKIINSAVLTGKNKKGDIVDNFVIMKVKKNEFIKNL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaatttaagttttttaaataaattaaaaaataaagaaaaaaatattctacaa
tctgaaaataatttttaccgcggtgcaattccgtggtttttattatgttcggaaaagaaa
aagataatttatatttccacatccaacagaaatttagaaaattatcatgcaatgcttgaa
aattactatgaaatgtcagaaaaacaaaaagatattttaacggaaaaatctaaaactggt
aaaaaagatagtaaagaaagtaaaaataaactggaagtaaaaaaaataattgatattttt
gaaaatatctcacaaaatgaggaagatattacagggataaatataagactgttagatatt
ctaaaaaatcaaaagcagtttattctatttgtaaatttacagattactttggatatattt
tttgaaaaagttaagtttttttcctttgaaactgggaaagaatacagtttttcaaaaatt
ctagaatttcttgtggaaaatgggtatgaaaattcatatttgattgaaaaaaaggggcag
tacagcagacgtggggatattcttgatattttcccgccagatttggaacaccctgttaga
ctcgagttttttggagatgaactggaaagtataagagtttttgatattgatagccagatt
tctgtggaaaagatggaagaaataaaggtttttggaaatttgctttctggaaataattat
gaattgattgagcttattgatgaattaaaggcggaagatgtaacgatcgttattgaaaat
gaggaattgctggactataaaatggaagagtttatcctacttgacagaagccgtgaggaa
acttatcgaaaaaggtatgaaaatttgaagaaaaaaagcatttttgttcagactaaaaat
ttctcgcaggagcagattgagacttttagggataaaaataggcttgaaaaattgtcaaaa
attgaagatatttatatttttacgaataactatgagaagaaaatggctgaatatggacaa
attctaactgaaaaggaaaacaatctggaaattgaaaaatatgagctgtttgaaggattt
atctttaatgataattcaaaaaatgctgatagcaaaaatagaaaaaataattttattgtg
cttacagacagagagcttgacggatatatttacgagcggaagaaaaaaacgacaaaagca
ataaaatataaaaaagtcaatcagattatcgaaggtgactacgtaattcacgttcagtac
ggtgttggaatttacaaaggaattcagacaatggaagagcgggattatctgaaaatcaag
tatgctgatgaggacattttgtatattcctgtggaaaagctggatagactggaaaaatat
gtgtcaaatgatatagaaccgcagttattcaggctaggaacacgtgggtttaagcgaaaa
aggaaaaagcttgaagaagatattcagaaatttgcggcagaacttatcaaaatacaggca
cgacggcaaagccagaatggttttgtgtatcagaaggatactgtgtggcaggaagaattt
gaggcgaattttccgtttgaggaaactgaagatcagagaaatgccataaatgacgtgaaa
aaggatatggaaagtccgcaaataatggacagaattgtctgtggagatgttggatatgga
aaaacggaagttgcgatgagagcggcattcaaagcgattgacaatggaaagcaggttgtt
atggtggctccgactacagtacttgcagaacagcattttgaacggtttaaaagaagattt
gaaaattatccgattacaattgagaatttatcacggcttacgaagagtaaatcaaaggac
attttaaaaaatttgaaaagtggaattattgacttggttattggaactcataggcttcta
agcgatgatgtgcagtttaagaacttagggcttttaattattgatgaggagcagaaattt
ggagttaaggctaaagaaaagttaaaatctcaaagggaaaagctggatgtgctgacatta
actgcgactccgattccacgtacattaaatcttgcgatgcttggaatcagagagatttcc
ataattgacactccgccaacaaacaggcttcccattataacagaagtactagattgggat
gaggaaacaataaaaatggcaatactgcgtgaactatcacgtgatgggcaagttttctat
atttataacgatgtaaaaaatatgaaggaaaaattgaaggaactaaaagaaatgcttcca
gactttgtaaaaattgaatttataaacggacagctcccgccaaaggaaattaaggataaa
ttattacgctttgaaaatgggcagtttgacattctgatagcttcaacaatcattgaaaat
ggaattgatgtagggaatgccaatacaattctgattgaaaactttactggtctaggatta
tcgcaggtatatcagctgaaagggcgtgtaggacgtagcaacaggcaaggatactgttat
ttattaaaaacgagaaatattacaaagcagggacgtcaaaaggaagaaagcatgctaaaa
gtggaaggaataaaatcaggaggttttcaaatttcgatggaagacttgaaaatacgtggt
gctggagaaattttgggagataagcagcacggaacgattgaaacttttggttatgacttg
tatataaaaatgctaaatgaggaaattcgtagacaaaagggcgagtttgttgaaaaaatt
gaaaatgtggaaatcatactaaatgaaagaggatttattccagaaacatatattgaaaga
gatgaaagattaaatatttataagcgatttgcaatgttggaaacagatagtgaattaact
ggtttgcttgatgaaattagagataggtttggaaaaattccagagcagatgaaaaaattc
attttaagcattaaattaaaattatttgctgaaaaacataaaattcagagaattcttgaa
acaagaaatcattttgaactatattttttagaaaatgcacaagaagagcgagcagaatta
agtgaaaaaattgaaatgaaaaaagtcgtgaaaattattaattcagcagttttaacagga
aaaaataaaaaaggagatattgttgataattttgttataatgaaagttaagaaaaatgaa
tttataaaaaatctgtaa
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