Lactobacillus taiwanensis: H1A07_07230
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Entry
H1A07_07230 CDS
T07177
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lta
Lactobacillus taiwanensis
Brite
KEGG Orthology (KO) [BR:
lta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lta03009
]
H1A07_07230 (rlmD)
Enzymes [BR:
lta01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H1A07_07230 (rlmD)
Ribosome biogenesis [BR:
lta03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H1A07_07230 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Cons_hypoth95
Methyltransf_15
Methyltransf_31
RrnaAD
MTS
TRM5-TYW2_MTfase
DOT1
PrmA
HMA
AsnC_trans_reg
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
QTQ39645
LinkDB
All DBs
Position
complement(1483242..1484588)
Genome browser
AA seq
448 aa
AA seq
DB search
MQKNQIVDLEITDLSYEAMGVAHLDGMTIFVNNALPGEVVSAKILKVKKNFAFAKIEKIK
KESPDRINVELRQWVQTGLASLAHIKYEKQLEFKRNQVVNLLHKADLDNIKVGQTLPSPE
ETGYRNKAQVPVREVHGKLDIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRTNYI
PAYDEIHNKGEVRYLDVRRSKASGEIMVILVCLHKDFPQLQKVTKEISEIKGVTSVVLNH
NPKKTNVILGKKDYLLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLK
PDDVVIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGIHNAEYVVGKAEE
VMPRWAKEGLKTDVIFVDPPRKGLTPEFIDAAVETDPKKIVYISCNPATMIRDLQLFREQ
GYDFNEIDPVDMFPQTPHVEAVAVLEKK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaatcaaattgtcgacttagaaattacggatttatcttatgaagcaatgggc
gttgctcacttagacggaatgactatctttgtaaataatgctcttccaggcgaagtagtt
tccgctaaaattttaaaggtaaagaagaattttgcctttgcgaaaattgaaaaaattaag
aaggaaagtccagatagaattaacgttgaacttcgtcaatgggttcaaacaggtttagcc
tcacttgctcatattaaatatgaaaagcaacttgaatttaaacgtaatcaagtagtgaac
ttattacataaggccgacttagataatattaaggttggtcagactttgcctagtccagaa
gagacaggctatcgtaataaggcacaagtgccagttcgtgaagttcatggcaagcttgat
attggtttctttagaaagcattcacatgatttagtaccgttaactaatttctttaccacg
gatccagaaattgatcgagttttaattaaagttcgtgatattttaagaacgaattatata
ccagcttatgatgaaattcacaataaaggtgaagtgcgttaccttgatgtacggcgctca
aaagcaagtggagagattatggtgattttggtctgcttgcataaggattttccacaattg
caaaaagtgactaaagaaatcagtgaaattaaaggtgttacaagcgtagtgttgaaccat
aatcctaaaaagactaacgtgattttaggtaagaaagattacttgctgtggggagagcct
cagattaccgacaaaattggggatgttagttttaagatttcaccacaaagtttctttcaa
attaattcactgcaaactccgcgcttatatgacttggcaattcaaaaggcagacctcaaa
cctgatgatgtagtgatcgatgcttattctggaattggaactattggcttgtcagttgct
aagcatgttaaggcagttcgagggatggaagttattaagccagctgttgacgatgctaac
gctaatgcaaaattaaatggtattcataatgctgaatatgttgtcggaaaagctgaagaa
gtaatgccacgctgggctaaggaaggacttaagactgatgtgatctttgttgatccacca
agaaagggattaacaccagaatttattgatgcagccgttgaaactgatcctaagaagatt
gtttatatctcatgcaatccggctacaatgattagagatctacaattgttccgtgaacag
ggttatgactttaacgaaattgatcctgttgatatgttccctcaaactccgcacgttgaa
gcagtggcggtgcttgagaagaaataa
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