Leptotrichia trevisanii: JMUB4039_0023
Help
Entry
JMUB4039_0023 CDS
T06733
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lte
Leptotrichia trevisanii
Pathway
lte03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JMUB4039_0023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lte03400
]
JMUB4039_0023
Enzymes [BR:
lte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JMUB4039_0023
DNA repair and recombination proteins [BR:
lte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JMUB4039_0023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
RecG_dom3_C
DUF7053
UB2H
Motif
Other DBs
NCBI-ProteinID:
BBM56074
LinkDB
All DBs
Position
complement(22750..25968)
Genome browser
AA seq
1072 aa
AA seq
DB search
MNFNLSFLDKIEKLKDKKIDILQSENNFYRGAIPWFLLCSEKKKIIYISTSNRNLENYHA
MLENYYEMSEKQKDILMKKSKTGKKNSKENINKLEDKKIIDIFENISQNKEDITGINIRL
LDILKNQEKFILFVNLQITLDIFFEKVKFFSFETGKEYSFSKIVEFLVENGYENSYLIEK
KGQYSRRGDILDIFPPDLENPVRLEFFGDELESIRIFDIDSQISVEKMEEIKVFGNLLSG
NNYELIELIDELRAEDVTIVIENEELLDYKMEEFILLDRSREETYRKRYENLKKKSIFVQ
TKNFSQEQIETFRDKNRLEKLSKIEDVYIFTNSYEKKMAEFGQILTEKENNLEIEKYELF
EGFVFNDNSENPDNKNRKNNFIVLTDRELDGYIYERKKKTAKAIKYKKVNQIIEGDYVIH
VQYGVGIYKGIQTMEERDYLKIKYADEDILYIPVEKLDRLEKYVSNDTEPQLFRLGTRGF
KRKRKKIEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPFEETEDQKNAIN
DVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERFK
RRFENYPITIENLSRLTKSKSKDILKNLKNGIIDLVIGTHRLLSDDVQFKNLGLLIIDEE
QKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITEIL
DWDEETIKIAILRELSRDGQVFYIYNDVKNMKEKLKKLKEMLPDFVKIEFINGQLPPKEI
KDKLLRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQLKGRVGRSNRQG
YCYLLKTRNITKQGLQKEESMLKVEGIKSGGFQISMEDLKIRGAGEILGDKQHGTIETFG
YDLYIKMLNEEIRKQKGEFIEKIENVEIILDERGFIPETYIEKDERLNIYKRFAMLETND
ELTELLDEVRDRFGKIPEQMKKFILSIKLKLFAEKHKIQRIFETRNYFELYFLENAQKEQ
AELNKKIEMRKIVKIVEAVSPNGKNKKEDVIENLVVMKVKKGDFLKIIINQN
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaacttaagttttttagataaaatagaaaaattaaaagataaaaaaatagat
attttacaatctgaaaataatttttaccgcggtgcaattccgtggtttttattatgttcg
gaaaagaaaaagataatttatatttccacatccaacagaaatttggaaaattatcatgca
atgctggaaaattactatgaaatgtcagaaaaacaaaaagatattttaatgaaaaaatct
aaaactggcaaaaaaaatagtaaagagaatataaataagctagaagataaaaaaataatt
gatatttttgaaaatatttcacaaaataaggaagatataacaggaataaatataagactg
ctggatattttaaaaaatcaggaaaaatttattttatttgtaaatttacagattactttg
gatatattttttgaaaaagttaagtttttttcttttgaaactgggaaagaatacagtttt
tcaaaaattgtggaatttcttgtggaaaatgggtatgaaaattcatatttgattgaaaaa
aaagggcaatatagcagacgtggagacattctcgatattttcccgccagatttggaaaat
cctgtcagactggaattttttggggatgaactggaaagtataagaatttttgacattgat
agccagatttctgtggaaaagatggaagaaataaaagtttttggaaatttactttctgga
aataattatgaacttattgagttaattgatgaattaagagcggaagatgtaacgatcgtt
attgaaaatgaggaattgctggactataaaatggaagagtttatcctgcttgacagaagc
cgtgaggaaacttatcgaaaaaggtatgaaaatctgaagaaaaaaagtattttcgtgcag
actaaaaatttctcacaggagcagattgaaacttttagggataaaaataggcttgagaaa
ttgtcaaaaattgaagatgtttatatttttacaaatagttacgaaaagaaaatggctgaa
tttggacaaattctaactgaaaaggaaaacaatctggaaattgaaaaatatgagctgttt
gaaggatttgtctttaatgataattcagaaaatccagataataaaaatagaaaaaataat
tttattgtactgacagacagggagcttgacggatatatttacgagcgaaagaaaaaaacg
gcaaaagctataaaatataaaaaagtcaatcagattatagaaggtgactatgtaatccat
gttcaatatggtgttggaatttataaaggaattcagacaatggaagagcgggattatttg
aaaatcaagtatgctgatgaagacattttatatattcctgtagaaaaacttgatagattg
gaaaaatatgtgtcaaatgatacagagccacagttattcaggctggggacacgtggattt
aagcggaaaaggaagaaaattgaagaggatattcagaaatttgcggcggaacttatcaaa
atacaggcaagacggcaaagccagaacggttttgtctatcagaaggatactgtgtggcag
gaggaatttgaagcgaattttccatttgaggaaaccgaggatcagaaaaatgcaataaat
gacgtgaaaaaggatatggaaagtccacaaataatggacaggattgtctgcggagatgtt
ggatatgggaaaacggaagttgcgatgagagccgcatttaaagcaattgacaatggaaag
caagttgttatggtggctccgactacggtgcttgcagaacagcattttgaacggtttaaa
agaagatttgaaaattatccgattacaattgagaatttatcacggcttacgaaaagtaaa
tccaaggacattttaaaaaatctaaaaaacggaattattgacttagttattggaactcac
aggcttctaagcgatgacgtgcagttcaagaacttagggctcttaattattgatgaggag
caaaaatttggcgttaaggctaaagagaagttaaaatctcaaagggaaaaactggatgtg
ctgacattaactgcaactccgattccacgtacattaaatcttgcgatgcttggaatcaga
gagatttccataattgacacacctccaacaaacaggcttcccattataacagaaattctc
gattgggatgaggaaacaataaaaatagcaatacttcgtgagctgtcacgtgatgggcaa
gttttctatatttataacgatgtaaaaaatatgaaggaaaagttgaagaaactgaaagaa
atgcttccagactttgtaaaaatcgaatttataaatgggcagcttccgccaaaggaaatt
aaggataaattactacgttttgaaaatgggcagtttgatattctaattgcttcaacaatc
attgaaaatggaattgacgtgggaaatgccaataccatcctgattgaaaactttactggc
ttgggattatctcaagtttaccagctaaaagggcgtgtaggacgtagcaacagacaaggt
tactgttatttattaaaaacgagaaatattacaaagcagggactacagaaggaagaaagc
atgctaaaggtggaaggtataaaatcaggcggttttcaaatttcgatggaagacttgaaa
atacgtggtgctggcgaaattttgggagataagcagcacggaacgattgaaacttttgga
tatgatttatatataaaaatgctaaatgaggaaattcgtaagcagaagggcgagtttatc
gaaaaaattgaaaatgtggaaattattctggatgaaagaggatttattccagaaacatat
attgaaaaggatgagagactgaatatctataaacgttttgcaatgctggaaacaaatgac
gaattgacggaactgctggatgaagtgagagataggttcgggaaaattccagagcagatg
aaaaaatttattttaagcattaaattaaaattatttgctgaaaaacataaaattcagaga
atttttgaaacaagaaattattttgaactgtactttttggaaaatgcacagaaagagcag
gcagaattaaataaaaaaattgaaatgagaaaaattgtaaagattgttgaggcagtaagt
ccgaatgggaaaaataaaaaagaagatgtaattgaaaatttagttgtaatgaaggtaaaa
aaaggagattttttaaaaattattattaaccaaaattaa
DBGET
integrated database retrieval system
