Leptotrichia trevisanii: JMUB4039_1570
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Entry
JMUB4039_1570 CDS
T06733
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lte
Leptotrichia trevisanii
Pathway
lte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMUB4039_1570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lte03019
]
JMUB4039_1570
03016 Transfer RNA biogenesis [BR:
lte03016
]
JMUB4039_1570
Enzymes [BR:
lte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JMUB4039_1570
Messenger RNA biogenesis [BR:
lte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JMUB4039_1570
Transfer RNA biogenesis [BR:
lte03016
]
Prokaryotic type
tRNA degradation factors
JMUB4039_1570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
Formyl_trans_C
Par3_HAL_N_term
KH-I_KHDC4-BBP
TcaA_3rd_4th
UPF0242
Motif
Other DBs
NCBI-ProteinID:
BBM57590
LinkDB
All DBs
Position
complement(1687776..1689875)
Genome browser
AA seq
699 aa
AA seq
DB search
MFEEKIYGFNLGNQKIKISTGKIARQAGGSVVVQCGGTMLLVTATRSKDVKEGQDFFPLT
VDYIEKFYASGKFPGGFIKRETKPGTDEVLISRLIDRPIRPLFPEGFLNSVHIVITVLSY
DEVNFPENLATIGVSAALGLSDIPFAGTVAGVTVGYINGEYILNPTGEQLLESEIQLSVA
GTKDAVTMVEAGAKEVSEEVMLEAIMFGHERIKEICAEQDKFLSQFDVQKYEFEKKEVEP
EIKEFIDGFESEVENAIMTPGKLEKYEAIDNLEIELFERYIEKLENEEREIDENAEKDFK
KYYRDVEKRLVRNAILYKQYRADGRQTTEIRPIDVEIDTLPVPHGSALFTRGETQALVVA
TLGSKEDEQIIDGMEDETRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHGNLAERALKYV
MPEQDKFPYTVRLVSEITESNGSSSQATICGGSLALMAAGVPIKSTVAGIAMGLIKEGDT
FTVLTDIQGLEDHLGDMDFKVAGTKDGITAIQMDIKIEGITWEIMEIALRQALEGRLFII
DKMEAVISEPRAEVSENAPKIEILKINPDKIAGLIGPGGKVIRAIIDETGVSIDIEDDGT
VSIFGKDLENMKKALELVKRQTQSVELNEVYEGKVTKLMKFGAFVEVLPGKEGLLHISEI
SNKRVEKTEDALKEGQNVRVKVISMESEDKFNLSMKTLL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaagagaaaatttatggttttaatttaggaaaccagaaaattaaaataagtaca
ggaaaaattgcacgtcaggctggaggttcagttgttgttcaatgtgggggaacaatgctg
cttgttacggcgactagaagtaaggacgtcaaggaagggcaggattttttcccgttgact
gttgattatattgaaaaattttatgcatcagggaaatttccaggtggatttataaaaagg
gaaactaagccaggaactgatgaagtcctgatttcaagattgattgacaggccaatcagg
ccattatttccagaaggatttttaaattctgtccatattgtaattacagtgctttcctat
gatgaagtgaattttcctgaaaatcttgctacaatcggtgtttctgccgctttgggatta
tcagatattccgtttgcgggaactgtggctggggttacagttggatacattaacggggaa
tacatcttgaatcctacaggggagcagctgttagaaagtgaaattcaattatcagttgca
ggtacaaaagatgccgtaacaatggtagaggctggagctaaggaagtttctgaggaagta
atgctggaagcgattatgtttgggcatgagagaattaaggaaatttgtgcggagcaggat
aagttcctgtcacagtttgatgtacagaaatatgaatttgagaaaaaggaagtagagcct
gaaatcaaggaatttattgatggctttgaaagtgaagttgaaaatgcgattatgacgcca
ggcaaactggaaaaatatgaggcaattgacaatttggaaatagaactttttgaaagatac
attgaaaaacttgaaaatgaagaaagggaaattgacgaaaacgctgaaaaagactttaag
aaatattatagggatgtggaaaaaagacttgtcagaaatgccattttgtacaagcaatac
cgtgctgatggacgtcaaactactgaaatccgtccaattgatgtggaaatagacacactt
ccagtgccacatggttctgcattgtttacacgtggggaaactcaggcattggttgttgca
acgcttggaagcaaggaagatgagcaaattattgatggaatggaagatgaaacacgtaaa
aaattcttcctgcattataatttcccgccatattcagttggagaagctggatttatgcgt
gcacctgggcgtcgtgaactgggacatggaaacttggctgaaagagcgttaaaatatgtt
atgccggaacaggacaaattcccgtatacagtaagacttgtttctgaaatcacagaatca
aacggatcttcatcccaagctacaatttgtggaggatcacttgcattaatggcggctgga
gtacctataaaatcaacagttgcaggaattgcaatgggacttataaaagaaggggatacg
tttactgttcttactgatattcagggacttgaagatcatttaggagatatggactttaaa
gttgcagggacaaaggatggaattactgcgattcagatggatataaaaattgagggaatt
acatgggaaataatggaaattgctttaagacaggcattagaaggaagattgttcattatt
gataaaatggaagctgtaattagcgagccaagagcggaagtttctgaaaatgcaccaaaa
attgagattcttaaaatcaaccctgataaaattgctggacttattgggccaggtggaaaa
gttatcagagcgattattgatgaaactggagtttcaatagatatcgaagatgacggaact
gtttcgatttttggaaaagatttggaaaatatgaaaaaagcattggaacttgtaaaaaga
cagacgcaatctgttgaattgaacgaggtttatgaaggaaaagttacaaaattgatgaaa
tttggtgcatttgtagaagtgctgccagggaaagaaggacttttacatatttctgaaata
agcaacaagagagtggaaaaaacagaagatgccttaaaagaagggcaaaatgtaagagtt
aaagtaatctcaatggaaagtgaagataaatttaacttaagcatgaagacattgttataa
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