Leptotrichia trevisanii: JMUB4039_1994
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Entry
JMUB4039_1994 CDS
T06733
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lte
Leptotrichia trevisanii
Pathway
lte03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lte00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JMUB4039_1994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lte03021
]
JMUB4039_1994
03400 DNA repair and recombination proteins [BR:
lte03400
]
JMUB4039_1994
Enzymes [BR:
lte01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JMUB4039_1994
Transcription machinery [BR:
lte03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JMUB4039_1994
DNA repair and recombination proteins [BR:
lte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JMUB4039_1994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Biotin_lipoyl
RnfC_N
PTS_EIIA_1
Motif
Other DBs
NCBI-ProteinID:
BBM58008
LinkDB
All DBs
Position
complement(2209706..2213776)
Genome browser
AA seq
1356 aa
AA seq
DB search
MSIRDFDSIQIKLASPEKILEWSYGEITKAETINYRTLKPEMDGLFCERIFGPSKDYECA
CGKYKRMRYKGMVCEKCGVEVTTSKVRRERMGHIKLATPIAHIWYSKGTPNKMSLLLGIS
TKELESVLYFSRYIVTDPGETGLQKGEILTEREYKLYENQFKNEFTAKMGAEGVLALLEE
IDLFDLEKKLQGEMDTEHSTQKRRKVIKRLKVVRDLIEAGNRPEWMIMTVLPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNIRLKKLMSIKAPEIVIKNEKRMLQEAVDALIDNGR
RGKPVVTQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMNQCGLPKK
MALELYKPFLMRELVKRELASNIKVAKKMVEEEDENVWELIEEIIKNHPVLLNRAPTLHR
LSIQAFEPILIEGKAIRLHPLVCSAFNADFDGDQMAVHLVLSQEAQMEAKLLMLATNNII
APSSGRPIAVPSQDMVMGCYYMTKERKGVKGEMKSFSNKNQLITAYQNGQVAVHALVKVR
IDGEAIKTTPGRLMFNTMLPKEVRDYSKTFGKGELGKLIAELYKRFGFEKTSELLDKIKE
FGFHYGTLAGITVGIEDLEIPESKKTILEKAENEVAEIEEQYKSGEIIDAERYRRTVAIW
DEAVSKVTKDMMDNLDEFNPVYMMANSGARGSIAQMRQLGGMRGLMADTQGRIIEMPIKA
NFREGLNILEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNHDDCGCEHGIV
VSDLMDAGEVIEKLSERIYGRNLATDLIHEGKVIAERNTLITDDLIKKIEELDIREVEIR
TPLTCKLEKGVCKKCYGLDLSNHKEILKGEAVGVIAAQSIGEPGTQLTMRTFHTGGVATA
ASVQSDYKADVSGKIKLRNISTLVNAEGKEIVVSQNGRVIIGKHRYEVPSGSILHVKDGD
SVKKGQVLVEFDPYQIPIITSEEGKVEFRDIYVRENIDVKYGVTEKVAIKPVESNDVNPR
IIIYTKDNRRVEYAVPYGAYLMVNEGDIVKKGQIITKILKTGEGNKDITGGLPRVQELFE
ARNPKGKAILSEVAGRVVFSDKKKKGMRLILIEDPENGELIQEYTVPVGEHLVVTNEMLI
EKGAKITDGPVSPHDILKIKGLVEAQQFILESVQQVYREQGVAVNDKHIEIIVKQMFQKI
KIKEAGDSLFLEDELIDKKIVERENEILISKGKRPATYEPVIQGITKAAVNTESFISASS
FQETTKVLANAAVEGKTDRLEGLKENVIIGKKIPGGTGFKDYKYLDAVLKNDVVEEEAME
TEVGEDGEKVEVTETLETLKENPNEVIENVEETVEQ
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagagattttgacagtattcaaataaaattggcatcaccagaaaaaatatta
gaatggtcgtatggtgaaataacaaaagccgaaacaataaattatagaactttaaaacct
gaaatggatggattattctgtgagagaatatttgggccatctaaggactatgagtgtgcc
tgcgggaagtacaagagaatgcgttacaaaggtatggtgtgtgaaaaatgtggtgttgaa
gtaacaacttcaaaagttagacgtgaaagaatgggacatataaaacttgctactccaatt
gcacatatctggtattctaaaggtacgcctaacaaaatgagccttttattgggaatcagt
acgaaagagctggaatcagttctatatttttcaagatatattgtgactgatccaggagaa
actggacttcaaaaaggtgaaattctgactgaacgtgaatataaactatatgaaaatcag
tttaaaaacgaatttacagcaaaaatgggtgctgagggagttttagccttgcttgaggaa
attgacttgtttgatttggagaaaaaactgcaaggtgaaatggatacagaacattctaca
caaaaaagaagaaaagttataaaaagattaaaagtagtaagagatttgatagaagcgggg
aataggccagaatggatgataatgactgtgttgcctgtaattcctgcggatttacgtccg
atggttcagttagatggtggaagatttgccacttctgacttgaatgatttgtacagaaga
gtaatcaacagaaatatcagacttaaaaaattaatgtcaataaaagctcctgaaattgta
ataaaaaatgaaaaaagaatgttgcaggaagcagttgacgcattaattgacaatggtaga
cgtggaaaacctgttgttactcaaaataacagggaattaaaatcactttctgatatgtta
aaagggaaacagggacgttttagacaaaatctactaggaaaacgtgtggactattcggga
agatcggttatcgttgttgggccaagtctgaaaatgaatcaatgtgggcttcctaaaaaa
atggcacttgagctgtataagccatttttgatgagagagcttgtaaaaagggaattagct
tcaaatattaaagttgctaagaaaatggttgaagaggaagatgaaaacgtatgggaattg
attgaggaaattattaaaaatcaccctgttcttctaaaccgtgccccaacattgcataga
ctttcaattcaggcatttgagccaatattgatagaaggaaaggcaataagacttcacccg
cttgtatgttctgcatttaatgcggattttgacggggatcaaatggcggtacacttggta
ttgtcacaggaagcacaaatggaagcaaaattattaatgcttgcaacaaataacattatt
gcaccatcaagtggtaggccgatagcggttccatcacaggatatggtaatgggatgttat
tacatgacaaaggaaagaaaaggtgtaaagggggaaatgaaatcgttctccaacaagaat
cagttaattacagcttatcaaaatggacaggttgcagttcatgcacttgtaaaggtaaga
attgacggggaagcaataaaaactacaccaggacgtcttatgtttaacacaatgcttcca
aaagaagtgagagattattctaaaacatttggtaaaggtgaattaggaaaattaatcgct
gaactgtacaaaagatttggatttgaaaaaacatcggaattattggataaaattaaggaa
tttggattccattatggaacacttgctggaattacagttggaattgaggatctggaaatt
cctgaaagtaaaaaaactattctggaaaaagctgaaaatgaagtggctgaaattgaagag
cagtataaatctggtgaaatcatcgatgcggaaagatatagaagaacagttgccatatgg
gatgaggctgtttcaaaggtaactaaggatatgatggataatttggatgaatttaatcca
gtttatatgatggcaaattccggagccagaggatcaattgcacaaatgcgtcaacttggt
ggaatgcgtggacttatggcagatacacagggacgtatcatcgaaatgccaattaaagct
aacttcagggaaggacttaacattcttgagttctttatgtcatcacatggagcaagaaaa
ggacttgccgatacagcgttaagaacggcggattcaggatatttgacaagaagacttgtt
gatatttcacacgaagttattgtaaatcatgatgactgtggatgtgaacacggaattgtg
gtatcagatttgatggatgccggggaagtaattgaaaaattgagtgaaagaatttatgga
agaaacttggcaacagacttgattcatgaaggaaaagttattgctgagagaaatacttta
ataactgatgacttgattaagaaaattgaagaactggatatccgtgaagttgaaataaga
acacctttgacttgtaaattggaaaaaggggtttgtaaaaaatgttatggattagatctt
tctaaccacaaggaaattcttaaaggagaagcagttggagttattgcggcacaatcaatt
ggagagccaggtacacagcttacaatgcgtactttccatactggaggagtagcgactgca
gcatctgttcagtcagattacaaggctgatgtttctggaaaaattaaacttagaaatatt
tccacacttgtaaatgctgaaggaaaagaaattgttgtttcgcaaaatggacgtgtaata
attggaaaacatagatatgaagttccatcaggttccattttgcacgtaaaagatggagat
tcagttaagaaagggcaagttcttgtagaatttgatccgtatcaaataccgattattacg
tctgaagaaggaaaagtggaatttagggatatttacgtaagggaaaatattgatgtaaaa
tatggagttactgaaaaagttgcaataaaacctgttgaaagtaacgacgtgaatcctaga
attatcatttatacaaaagacaacagaagagttgaatatgcagttccatatggtgcgtat
ttaatggtaaatgaaggggatatagtcaagaaggggcaaattattacaaaaatccttaaa
actggggaaggaaataaagatattacaggagggcttcctcgtgtgcaagaattatttgag
gcaagaaatcctaaaggaaaagctattctgtcagaagttgcagggcgtgtagttttctca
gacaaaaagaaaaaaggtatgagattaatcctgattgaagatcctgaaaacggggaatta
attcaggaatatacagttccggtgggagaacatctagttgtaactaacgaaatgttaatt
gaaaaaggtgctaaaattactgacgggcctgtttcgccacatgatattctaaaaataaaa
gggcttgtggaagcacagcaatttatccttgagtcagtacagcaagtatatagggaacaa
ggagttgcggttaatgataaacatattgaaataatcgtaaaacaaatgttccaaaagatc
aagattaaggaagctggagattcactattccttgaagatgaattaattgataagaaaatt
gtagaacgtgaaaatgaaatattaatttcaaagggaaaacgtccagcaacatatgaacca
gtaattcaaggtatcacaaaagccgctgtaaatacagaaagtttcatttcagcatcatca
ttccaggaaacgacaaaagttcttgcaaatgctgctgttgaagggaaaacagacagactt
gaaggactgaaggaaaatgtaattatcggtaagaaaataccgggaggaactggatttaaa
gactataaatatctggatgcagttttaaaaaatgatgttgtggaagaggaagcaatggaa
actgaagttggagaggacggagaaaaagtcgaagttacagaaactttggaaacattgaag
gagaacccaaatgaagttatagaaaatgttgaagaaacagtggaacagtaa
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