Lachancea thermotolerans: KLTH0A05918g
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Entry
KLTH0A05918g CDS
T01117
Name
(RefSeq) DEAH-box RNA-dependent ATPase PRP2
KO
K12814
pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 [EC:
5.6.2.6
]
Organism
lth
Lachancea thermotolerans
Pathway
lth03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KLTH0A05918g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lth03041
]
KLTH0A05918g
Enzymes [BR:
lth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KLTH0A05918g
Spliceosome [BR:
lth03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
KLTH0A05918g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
DEAD
AAA_22
HA2_C
AAA_19
Cas3-like_C_2
T2SSE
AAA_30
ABC_tran
nSTAND3
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
8290520
NCBI-ProteinID:
XP_002551716
UniProt:
C5DBW7
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All DBs
Position
A:complement(487673..490363)
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AA seq
896 aa
AA seq
DB search
MSGTISGTGKRRLKSHDVVDDAPIKKPKAHEEGASQNDGLQAQQKSTDLNTGEVDHNIDE
MRILARRQYLASREQLKLQVLQQELVFLEKDVEKYGWEQLTQKERDEITLKRELVALVQQ
REDAGKHGFKFQDDYIDENGSIDLNRKQQLLKRKPAQNGEKESRQKLWEDQQMKNAVRAA
SGAEEIYVEGSQGYDFVFDDEAMIEFTEDSNEDVLPEEHSEYDNKLLTELERENKRLLTI
QETRKSLPVYHFRQELLTSIKENQILIVVGETGSGKTTQLPQYLVEDGYTQRGRYQIACT
QPRRVAATSVAARVADEMNVVLGKQVGYSIRFEDKTTPDTTILKYMTDGMLLREFMTDPE
LSKYACIMIDEAHERTLATDVLLGLLKDILPHRKDLKLIISSATMNATKFSSFFYDAPIF
NVPGRRFPVDIHYTLQPEANYLNAAVTTIFQIHTTQALPGDILVFLTGQEEIEAAQQSLE
DIAHALGDKIKDMVIAPIYANLPQEQQSKIFQKTPQDCRKIVLATNIAETSLTIDGIKYV
VDPGFVKENSYVPSTGMSQLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTKWSYFHELEP
LPKPEILRTNLSQVVLLLLSLGVTDLINFPLLDKPSIPALSKALENLYILGALNSKGVIT
RLGRMMCEFPCEPDFGKVIHTAATHESCKGALEEVVTIVAMLHETASIFVHARAERDQNK
TAVVGKVSSDHMLYLRTFNSWRDMDYSKSWCFDHKVQYKTMVRVRNIRDQLWRCCDKLGL
AALNEKAMKSLNVDENLEPRIIKSFIAGFPTNVARLSPTGYRTLGKSQGGVNVSIHPTST
VFQAARQDMKKPSKLILYQRLVLTSKEFMRDCMPVPREDWLQEMVPHYFNGDNTQD
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaactatatctggaaccggaaaaaggcgactgaaaagccatgatgtggttgat
gatgccccgatcaagaagcctaaagctcacgaagagggtgcttctcagaatgatggtcta
caagcacagcagaagagtacggacctaaatactggggaagtagaccacaatatagatgaa
atgcgtatcctcgcaaggcggcaatacttggcttcgcgggaacagctaaaactacaagtg
ctgcaacaggagcttgtttttctcgagaaagacgttgagaagtatggatgggagcagctc
acgcaaaaggagagggacgaaattaccctcaaaagagaactagttgcccttgtccaacag
cgcgaagatgctgggaaacacggattcaaattccaagatgactatattgacgagaacggg
agcattgatttgaaccgcaagcaacagcttcttaagcgcaagcctgctcagaatggtgag
aaagagtctcggcagaagctatgggaagatcaacaaatgaagaacgcagtacgcgctgca
tcaggtgcagaagaaatttatgttgaaggttcccaaggctacgattttgttttcgatgac
gaagctatgatcgaatttacagaggattctaacgaagatgttcttccagaagagcattct
gagtacgataataagcttctaacagagcttgaaagggaaaacaagcgcttgttgacaatc
caggaaactcgcaagtctttgcctgtttaccactttcgccaagaactcctcacaagtatt
aaagaaaatcagattttgattgtagttggtgagactggttcaggaaaaaccacgcaactg
ccccagtatctcgtggaggatggatatacccagaggggtagataccagatcgcgtgtact
caacctcgtcgtgtcgctgcgacatctgtggccgccagagtagcagatgagatgaatgtt
gtattgggcaaacaagttgggtattcgatcagatttgaagacaaaacaactcccgacacc
accattttgaaatatatgacggacggtatgcttttgcgagagttcatgaccgaccccgag
ctcagcaaatatgcatgcatcatgatagatgaggcacacgaaagaactttagcaacagat
gtgcttctaggactgcttaaagacatactaccccaccgcaaagacctgaaactcatcatc
tcgtctgctaccatgaacgccacgaagttttccagcttcttttacgatgcaccgattttc
aacgtcccgggcaggcgtttccctgtagatatacattacacactgcaacctgaggctaat
tatctcaacgcggcagtaactactattttccaaattcacaccactcaagcgcttccaggt
gatatactagtgttcttgactggtcaagaggagattgaagctgcacagcaaagcttggag
gacatagcgcatgcactaggtgacaaaatcaaagacatggttattgccccgatttacgcc
aatctcccacaagagcagcagtccaaaatttttcagaaaacaccgcaagattgccggaaa
attgtcctggctacaaacattgcagagacttcacttactatcgacggcataaagtacgtt
gttgatcccggctttgttaaggaaaactcgtatgttccttcaactggcatgtctcaatta
ttgacagtgccgtgctctcgcgcgtcggtggatcagcgtgctggccgtgctggtcgtgtc
gggccgggcaagtgttttcgaattttcacgaaatggtcgtatttccatgaacttgagcct
ctaccaaagccagaaatactgaggactaacttgtctcaagttgttctcctacttttatct
ctaggtgtaactgacctcataaattttccgcttctggacaagcctagcattccagcgctc
agcaaggcgttggagaacctgtatatccttggtgcgcttaacagtaaaggcgtcataaca
aggctagggcggatgatgtgcgagtttccttgcgagccagactttgggaaggtcattcac
actgcagctacacatgagagttgtaagggcgcactcgaggaggttgtgaccatagttgca
atgcttcatgagacagcttctatatttgtgcacgcacgcgccgagcgtgaccagaataaa
acggcggttgtaggaaaggtctccagcgaccatatgctttatttgcgaacctttaacagc
tggagagacatggactattcaaagtcttggtgcttcgatcataaggtgcaatacaagacg
atggttagagtgcgaaacatcagagatcaactttggagatgttgcgataaactcggtctg
gcggctctcaatgaaaaggccatgaaatctttaaatgtcgacgaaaacctagaacctcgt
attatcaagagttttattgctggtttcccaactaacgttgctcgtctgagccctactggt
tatcgaaccctcgggaaaagtcaaggtggtgtcaatgttagcatacacccaacaagtact
gttttccaggcagctaggcaagacatgaagaaaccttcaaagctcattctctaccagcga
ctcgtacttacgtcaaaagaatttatgcgtgactgcatgccagttcctcgtgaagattgg
cttcaagaaatggttccacactacttcaacggcgacaatactcaggactag
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