Lachancea thermotolerans: KLTH0C06248g
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Entry
KLTH0C06248g CDS
T01117
Name
(RefSeq) U6 snRNA complex subunit LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
lth
Lachancea thermotolerans
Pathway
lth03018
RNA degradation
lth03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KLTH0C06248g
09123 Folding, sorting and degradation
03018 RNA degradation
KLTH0C06248g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lth03019
]
KLTH0C06248g
03041 Spliceosome [BR:
lth03041
]
KLTH0C06248g
Messenger RNA biogenesis [BR:
lth03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
KLTH0C06248g
mRNA degradation factors
5'-3' decay
Lsm complex
KLTH0C06248g
Spliceosome [BR:
lth03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
KLTH0C06248g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
BapA_N
Motif
Other DBs
NCBI-GeneID:
8291365
NCBI-ProteinID:
XP_002552497
UniProt:
C5DE48
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All DBs
Position
C:complement(543231..543758)
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AA seq
175 aa
AA seq
DB search
MLPLYLLTNAKGQQLVIELKNGETIVGQLTNVDNWMNLTLTDVTHTSASDTVKLSEIYVR
GNFIKYIKLQDDVIEKVKQSNAQQQSQGHHQGRDFRRRQGGGRRDGDKRFHSGNPRRGDG
RDSYHNNGGNRRFNNNYNRAEGGNSGNNAMGGFVRHHQTSAQPGTFLGGQGQQNA
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atgcttccattatacctgttaactaacgccaaagggcagcagctagttatagagctaaaa
aatggcgaaactattgtgggccaattaaccaatgtcgacaactggatgaacttgacgcta
acggacgtcacacatacatcagcaagcgacactgtcaagctatcggaaatctatgttaga
gggaacttcatcaagtacatcaagcttcaggatgatgtgattgaaaaagtcaagcagtct
aatgcgcagcagcaatcccaaggtcatcaccagggcagagatttcagacgtagacaaggc
ggaggaagaagagacggcgacaagagattccattctggtaaccctcggagaggtgacggc
agagactcataccataataatggtggaaaccgtcgttttaacaacaactacaacagagca
gagggcggaaattcgggaaacaacgcaatgggcgggtttgttagacaccaccagacttca
gcgcagcccggcacatttttaggagggcagggtcagcagaacgcgtag
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