Lachancea thermotolerans: KLTH0C09988g
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Entry
KLTH0C09988g CDS
T01117
Name
(RefSeq) mismatch repair ATPase MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lth
Lachancea thermotolerans
Pathway
lth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KLTH0C09988g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lth03400
]
KLTH0C09988g
DNA repair and recombination proteins [BR:
lth03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
KLTH0C09988g
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
8291533
NCBI-ProteinID:
XP_002552653
UniProt:
C5DEK4
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Position
C:825726..828593
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AA seq
955 aa
AA seq
DB search
MSSSRPELKFFDISEERGFYKRFSTLPEKPPKTIRIVDKGEYYTVVGNDALFVADNVYHT
NSVLKDCRIDPSTAKSIQEPLKYVTISSQVLSGLLKLCLLEQGMKVEIYDKSWKLLRNGS
PGNIEQVDDLMNISLDSSIVLTSIKIQPNAQEGNCVLGVSFIDSSSYKIGMLDIVDNEVY
SNLESFLIQMGVKECLLPDLRSNETVANELKKMVGVLDRCGCVSTFVKNSDFSHRDVDQD
LVKLVGDELSMSLMKFSNLALGSCNALLSYLQLLNDESQLGRYELVQHSLTEFMKLDASA
LKALNIFPTGPSGASGVSVSHGGGSGGKVSSIFQLLNKCKTNAGVRLLNQWLKQPLTDLQ
AIQNRHDLVEFLIDQLELRQVLQSDYLPLVPDVRRLTKKLNKNGGLEDVLKIYQFARKIP
EVSQVLEDYLGNMDGGDSIKPLVTETWLQPLNAHITPLDKFQEMVETTVDLEAYEDTNEF
MIKVDFNEDLAKIRGELDALKDNIKSIHLDAAEDLGFDPEKKLKLENHHMHGWCMRLTRN
DGKALRQHRKYLELTTVKAGIYFSTRELKQIAEQTAILQKEYDRLQYDLVKEIVQITLTY
TPVLEKLSIVLANLDVLSAFAHVSSYAPIPYVRPQMHGLGTQRKTELIGSRHPVLETLDD
VTFISNDVRLESGKSEFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCDTAEIAVVDA
VLCRVGAGDSQLKGVSTFMVEMLETASILKNATENSLIIVDELGRGTSTYDGFGLAWSIS
EHIARNVRCFALFATHFHELTSLADQVPTVQNMHVIAHIEDARASTHSADDITLLYKVEP
GISDQSFGIHVAEVVQFPAKLVSMAKRKAAELEDLKHDSQALKRQKCSAGEIAEGTRVLK
DVLKAWAAAVRAEGLHEKLSDDESQARVLELLNQVSAASAQTDNKFMKEIAELLM
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgagtcgccccgagctgaagttctttgatatctcggaagaacgaggattttac
aagcgcttctcgaccctaccagaaaagccaccgaaaaccatcagaatcgtcgacaagggc
gagtactacacggttgttgggaatgacgcgctgtttgtcgcggacaatgtttatcacaca
aattctgtgttgaaggactgtcggatcgacccaagtacggcgaaatcaatccaagagcca
ttgaaatacgttacaatctcttctcaagtactctcaggattgctgaaactgtgtctactg
gagcaaggaatgaaggttgagatctatgacaaatcctggaagctgctcagaaacggatca
cccggaaacatcgagcaggttgacgatttaatgaacatctcattggattcgtcaattgtt
ctgacaagtatcaagattcagcctaatgcccaagagggcaattgcgtcttgggcgtctcc
ttcatcgatagtagctcttacaaaattggcatgttggatattgtggacaacgaagtctac
tctaacctggaaagttttctcattcagatgggtgtgaaagaatgcttgctgccagatttg
agaagtaacgaaactgtggccaacgaactgaaaaagatggtgggcgtgctggaccgttgc
ggctgcgtttcgactttcgtcaagaactcggacttttctcacagggacgtggatcaagac
ctggtaaaactggttggcgacgagctttccatgtctttgatgaagttttccaatctggca
cttggatcgtgtaacgctttgctgagttatcttcagttgctgaacgacgaatcccagctt
gggaggtacgagctggttcaacattctttgacggagttcatgaagctggacgcgtcggca
ctcaaggccctcaacatcttcccaacaggccccagcggggccagtggagtgtctgtcagc
cacggcggcggaagcggaggaaaggtttccagtattttccagctgctgaacaagtgcaag
accaacgccggcgtacggctactcaaccagtggttgaaacagcctctaacagaccttcag
gccatccaaaacaggcacgatctcgtggagtttttaatcgaccaacttgagctgagacaa
gtgctacagtctgattacctgcccttggtcccggacgttaggaggttgaccaagaaactg
aataaaaacggcggtctcgaagacgtcttgaagatctaccagtttgctcggaaaatccca
gaggtctctcaggttctggaagactacttgggcaacatggacgggggcgactccatcaag
cccctcgtgacggagacgtggctccagccacttaacgcgcacataacgcccctcgacaag
tttcaagagatggtggagactacggtcgatctcgaagcgtacgaagacactaacgaattt
atgataaaggtcgacttcaacgaggacctggccaagattcggggcgagctggacgccctc
aaggacaacatcaaaagcatccacttggatgcagcagaggacctgggcttcgaccccgag
aagaagctcaagctggagaaccaccacatgcacgggtggtgtatgcgactgaccagaaac
gatggaaaggcgctccgtcagcacaggaagtacctggagctgaccacggtgaaggcgggc
atttacttcagcaccagagagctcaagcagattgctgagcagaccgcaatcctgcagaag
gaatacgacaggctacagtatgacctcgtgaaagagatcgtgcagatcacgctcacatac
acgccggtgctggagaagctgtccatcgtgctggcaaacctggacgtgctgagcgcgttc
gcgcatgtgtcgtcgtacgcgccaatcccatacgtgaggccccagatgcacgggctgggc
acgcagcgcaagacagagctgatcggctcgcggcacccggtgctggagacgctggacgac
gtgacgttcatctccaacgacgtgcggctggagagcggcaagagcgagttcctgatcatc
accgggcccaacatgggcggaaagtccacctacatccggcaggtgggcgtgatctcgctg
atggcgcagatcgggtgctttgtgccctgcgacactgcggagatcgcggtcgtggacgcg
gtgctgtgccgtgtgggcgcgggcgactcccagctcaagggcgtgtccacgttcatggtc
gagatgctcgagaccgcgtccatcctgaagaacgccacggagaactcgctgatcatcgtg
gatgagctgggccgcgggaccagcacctacgacggcttcggcctggcctggtccatctcc
gagcacatcgcccgcaacgtgcgctgcttcgcgctcttcgcgacccacttccacgagctc
acctcgctcgcggaccaggtgcccaccgtccagaacatgcacgtcatagcccacatcgag
gacgcccgcgccagcacccacagcgccgacgacatcaccctgctctacaaggtcgagccg
ggcatctccgaccagtccttcggcatccacgtcgccgaggtcgtgcagttcccggccaag
ctcgtgtccatggccaagcgcaaggccgcagagctcgaggacctgaagcacgattcccag
gctctgaagcgccagaagtgctctgcgggcgagatcgcagagggcacccgcgtgctgaag
gacgtgctcaaggcctgggccgccgcggtccgcgccgagggcctgcacgagaagctctcc
gacgacgagagccaggcccgcgtgctggagctgctgaaccaggtctccgccgcctctgcc
cagacggacaacaaattcatgaaggaaatcgctgaattgctaatgtga
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