Lachancea thermotolerans: KLTH0E10318g
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Entry
KLTH0E10318g CDS
T01117
Name
(RefSeq) KLTH0E10318p
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lth
Lachancea thermotolerans
Pathway
lth03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
KLTH0E10318g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lth03021
]
KLTH0E10318g
03019 Messenger RNA biogenesis [BR:
lth03019
]
KLTH0E10318g
Transcription machinery [BR:
lth03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
KLTH0E10318g
Messenger RNA biogenesis [BR:
lth03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
KLTH0E10318g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pfc11_Rna14-15-ID
Pcf11_C
Pfc11_Clp1_ID
CID
VHS
zf_PCFS4
Spore_II_R
Motif
Other DBs
NCBI-GeneID:
8292089
NCBI-ProteinID:
XP_002553924
UniProt:
C5DI76
LinkDB
All DBs
Position
E:complement(932380..934125)
Genome browser
AA seq
581 aa
AA seq
DB search
MECDKIAKDFASILDELTCNSKPIISTLTKMAEENIGCAQQMVDAIERRIERCVPNQKLY
AFYVLDSICKNAGSPYTIYFSRNLAQLYKRTYLIVDNQTRSDLIKMFKTWLMPSSSSMGD
HLFGKEALDAIERFLVKASALHQKHVAAPTVPGLLREIDKLSLLTRERAAQNPHDAKLKT
KVVVLQQLKQELQREKMPPQALQQVQMQLRQIFAQEQQVLQQQHQQQQLQHQHQQQRLPR
KALSTPPPQAPGATPAPRESEPVSLFGTPSLSSSFFPNASNIQPPTSEPSQKASKVQALY
DTLRAEGLVKPVPQQSVVTLDRILSQNHKESAQTTLPPLNLLKDILGDVQSHFSTVGVDI
LNTPNLQLCQQTVIQDNPTVMQLRHLLYRYKPNKCSTCGKRFGSSEEEKKQERDHLDWHF
RINKRIKGTAGANGATAKNIQSRNWYLDDTQWQRFNDEEIVSTTRSETDSVTLANLDAST
ASSSFSTSKFDAKSAPEKTEADLAKKYVTVPETHEDMSFQCPICREVQSAVYNDDIGEWI
WPNCIQSQGKYFHSTCFHEAVEETPQQALNQGLERLKGLAG
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcgacaagatagccaaggacttcgccagcatcctggacgagctgacgtgcaac
tccaagcccatcatcagcacgctcaccaagatggccgaggagaacatcggatgcgcgcag
cagatggtcgacgcgatcgagcggcgcatcgagcgctgcgtgcccaaccagaagctgtac
gcgttctacgtgctcgactccatctgtaagaacgcgggctcgccctacaccatctacttc
tcgcgcaacctcgcccagctgtacaagcgcacgtatctcatcgtcgacaaccagacgcgc
tcggacctcatcaagatgttcaagacgtggctgatgcccagcagtagctccatgggcgac
cacctgttcggcaaggaggcgctggacgccattgagcgctttctggtcaaggccagcgcg
ctccatcagaaacacgtcgccgcgccgaccgtgcccggactgctgcgcgagatcgacaag
ctcagcctgctgacccgcgagcgcgccgcccagaatccgcatgacgccaagctcaagaca
aaggtcgtcgtgctgcagcagctcaagcaggagctgcagcgcgagaagatgccgccgcag
gcgctccagcaggtccagatgcaactccgccagatcttcgcccaggaacagcaagttttg
caacaacagcaccaacaacagcaactgcagcaccagcaccaacagcagcgcctacccagg
aaggccctaagcacgcccccgccgcaggcgccgggcgctacgcccgcccccagggaatct
gagcccgtgtccctcttcggcaccccgtcgctatcgtcctcgttcttcccaaacgcctcc
aacatccaaccgccgacctccgagccctcccaaaaggcttccaaggtccaagctctttac
gacacgctgcgcgccgagggcctggtcaagcctgttccacagcagtccgttgttacctta
gaccgcatcctctcccaaaaccacaaggagagcgcacaaaccaccttgccacctctgaat
ctcctgaaggacattctgggggacgtgcagtcccatttttccaccgtgggcgtcgacatc
ctcaacaccccaaacctgcaactgtgtcagcaaaccgtcatccaggacaatcccaccgta
atgcagctcagacacctgctttaccgctacaagcctaataagtgcagcacctgtggcaag
aggttcggctcgtccgaggaagaaaaaaagcaggagcgagaccatctggattggcacttc
agaatcaacaagaggatcaagggcacggcaggcgcaaacggcgccactgccaaaaacata
cagtccagaaactggtacctggacgatactcaatggcagcgcttcaacgacgaggagatt
gtttcgactacgagatcagagaccgactccgtcacgttggcaaacctggatgccagcact
gcttcctcgtccttcagcacctcgaagttcgatgcaaaatctgccccggagaagacagag
gcagatctcgcaaagaaatatgtcactgtgccggaaacgcacgaggacatgtcctttcag
tgcccgatttgcagagaagtccaatctgctgtttacaacgacgatattggggagtggatc
tggcccaactgcatccaatcccaggggaagtacttccactctacgtgcttccatgaagct
gtggaagagactccgcaacaagctcttaatcagggcttggaacgcttgaaaggcttggct
ggataa
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